Hg_chrom1_TN10mRNA_2284
Organism: Heterodera glycines Gene Locus: chr1:18755975-18758985 Feature type: polypeptideProtein Sequence
Length: 246
(Signal peptide: 1-17)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.087 | 0.756 | 0.813 | 0.701 | 1.355 | 2.293 | 0.919 | 0.61 | 0.361 | 0.879 | 1.293 | 0.478 | 2.033 | 0.938 | 0.664 | 0.929 | 0.866 | 1.17 | 0.313 | 0.598 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2195
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_26104
|
— |
8-Eggs_J4_Males
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-17
|
0.990
|
1.000
|
0.000
|
0.000
|
0.440
|
0.263
|
0.024
|
0.267
|
0.307
|
0.090
|
0.073
|
0.048
|
0.087
|
0.807
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006513
|
1.000
|
1.000
|
Hsc_gene_26104.t1
|
Hsc_gene_26104.t1
|
— |
Q9TXA7.2 Filarial antigen Av33 [Acanthocheilonema viteae]
|
AVA09664.1 putative effector protein [Heterodera avenae]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR010480+26-96_119-191+|IPR038412+33-128_129-244+|IPR051901+25-243+
|
— |
PF06394+26-96_119-191+Pepsin_inhibitor-3-like_repeated_domain
|
— |
PTHR37969+25-243+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
195-246
|
1.000
|
1-194
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.648
|
27118.460
|
6.263
|
-0.500
|
25.610
|
10.976
|
49.593
|
50.407
|
13.008
|
12.602
|
51.220
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
8169.692
|
26581.329
|
6796.554
|
3347.008
|
5328.118
|
16119.434
|
7148.385
|
8810.672
|
2941.890
|
5736.671
|
4538.908
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.196
|
-3.127
|
-0.914
|
0.638
|
1.613
|
-1.164
|
-0.976
|
-0.160
|
— | — | — | — | — |