Hg_chrom1_TN10mRNA_2285
Organism: Heterodera glycines Gene Locus: chr1:18761048-18774384 Feature type: polypeptideProtein Sequence
Length: 1,459
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.901 | 0.94 | 0.835 | 2.978 | 0.674 | 1.494 | 0.93 | 1.302 | 0.685 | 0.797 | 0.249 | 1.411 | 0.514 | 1.964 | 1.371 | 1.283 | 0.933 | 0.82 | 0.316 | 0.706 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2196
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.526
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KRSR,RHGRRHRARHRDH
|
— | — |
43-68
|
0.977
|
— | — |
0.014
|
— | — |
0.103
|
0.069
|
0.016
|
0.181
|
0.050
|
0.102
|
0.108
|
0.009
|
0.302
|
0.866
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003158
|
1.000
|
2.000
|
Hsc_gene_26102.t1;Hsc_gene_26102.t2
|
Hsc_gene_26102.t1;Hsc_gene_26102.t2
|
— | — |
KAI1727693.1 lustrin, cysteine-rich repeated domain-containing protein [Ditylenchus destructor]
|
No
|
-0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR006150+75-116_126-172_177-224_227-280_324-365_368-421_426-472_485-528_572-620_700-746_753-799_812-859_864-912_918-965_971-1018_1057-1103_1108-1172_1233-1279_1313-1379_1382-1452+|IPR028150+127-172_178-223_228-280_369-421_487-527_581-620_702-745_755-799_814-859_866-911_920-965_973-1017_1059-1102_1152-1172_1235-1278+|IPR053014+1058-1175+
|
SM00289+75-116_126-172_177-224_227-280_324-365_368-421_426-472_485-528_572-620_700-746_753-799_812-859_864-912_918-965_971-1018_1057-1103_1108-1172_1233-1279_1313-1379_1382-1452+
|
PF14625+127-172_178-223_228-280_369-421_487-527_581-620_702-745_755-799_814-859_866-911_920-965_973-1017_1059-1102_1152-1172_1235-1278+Lustrin,_cysteine-rich_repeated_domain
|
— |
PTHR46339+1058-1175+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
540-584;621-703
|
3.000
|
1-539;585-620;704-1459
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.902
|
156413.890
|
7.044
|
15.000
|
19.602
|
7.265
|
44.140
|
55.860
|
10.966
|
8.636
|
63.125
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
blue
|
442.193
|
136.143
|
161.192
|
119.931
|
154.391
|
266.191
|
114.037
|
161.811
|
31.970
|
1492.981
|
866.833
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.320
|
-0.317
|
0.333
|
0.799
|
-1.213
|
-0.826
|
-0.362
|
-5.662
|
— |
-2.814
|
— | — |
No JSON data available for plots.