Hg_chrom1_TN10mRNA_2286
Organism: Heterodera glycines Gene Locus: chr1:18780999-18792765 Feature type: polypeptideProtein Sequence
Length: 1,075
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.919 | 0.887 | 0.677 | 0.738 | 0.961 | 0.811 | 0.786 | 1.209 | 1.199 | 1.458 | 0.296 | 1.642 | 1.783 | 0.859 | 1.31 | 1.223 | 1.083 | 1.156 | 1.073 | 0.602 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2197
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— |
RRRR
|
39-59
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.113
|
0.108
|
0.006
|
0.114
|
0.410
|
0.659
|
0.558
|
0.031
|
0.547
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003159
|
1.000
|
2.000
|
Hsc_gene_26100.t1;Hsc_gene_26100.t2
|
Hsc_gene_26100.t1;Hsc_gene_26100.t2
|
— |
Q9XWL9.3 Patched-related protein 18 [Caenorhabditis elegans]
|
KAF7638515.1 SSD domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.826|GO:0110165_0.826|GO:0071944_0.783|GO:0005886_0.778|GO:0016020_0.778|GO:0008150_0.751|GO:0009987_0.580|GO:0032501_0.520
|
IPR000731+322-497+|IPR003392+70-1002+|IPR051697+32-1022+
|
— |
PF02460+70-1002+Patched_family
|
G3DSA:1.20.1640.10:FF:000013+801-1005+PaTched_Related_family
|
PTHR10796+32-1022+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-1075
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.665
|
119304.160
|
6.562
|
1.000
|
20.279
|
12.279
|
42.419
|
57.581
|
10.791
|
9.488
|
51.442
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
lightyellow
|
1352.821
|
116.742
|
54.725
|
68.089
|
841.619
|
3798.052
|
230.964
|
343.823
|
0.000
|
3873.335
|
2213.334
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.323
|
-0.915
|
0.425
|
3.596
|
2.188
|
-4.029
|
-3.583
|
— |
-12.722
|
6.946
|
— | — | — |
No JSON data available for plots.