Hg_chrom1_TN10mRNA_23
Organism: Heterodera glycines Gene Locus: chr1:218617-220435 Feature type: polypeptideProtein Sequence
Length: 197
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.003 | 0.826 | 1.108 | 1.05 | 0.677 | 0.911 | 0.786 | 2.03 | 1.015 | 1.166 | 0.461 | 0.896 | 0.987 | 1.562 | 1.243 | 1.015 | 1.248 | 0.846 | 0.781 | 1.045 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_23
|
— | — |
1.667
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
3.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — |
48-68
|
0.997
|
43-64
|
0.997
|
— | — |
0.000
|
— | — |
0.049
|
0.153
|
0.026
|
0.129
|
0.083
|
0.154
|
0.216
|
0.012
|
0.227
|
0.924
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005557
|
1.000
|
1.000
|
Hsc_gene_14942.t1
|
Hsc_gene_14942.t1
|
— |
O54819.1 Tissue factor pathway inhibitor [Mus musculus]
|
KAI1711776.1 kunitz/Bovine pancreatic trypsin inhibitor domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867
|
GO:0005575_0.789|GO:0110165_0.782|GO:0008150_0.778|GO:0009987_0.698|GO:0003674_0.659|GO:0071944_0.566
|
IPR002223+94-108_95-193_155-193_156-192_167-177_177-192+|IPR036880+93-194_153-193+|IPR050098+34-193+
|
SM00131+95-193+
|
PF00014+155-193+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain
|
— |
PTHR10083+34-193+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-197
|
1irh_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.734
|
21697.530
|
6.889
|
2.000
|
23.350
|
12.183
|
45.178
|
54.822
|
13.198
|
10.152
|
56.345
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
922.994
|
420.721
|
413.697
|
623.945
|
1121.086
|
1750.578
|
501.147
|
685.939
|
473.720
|
1613.890
|
1125.245
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.254
|
0.431
|
0.702
|
0.813
|
0.658
|
-1.795
|
-1.457
|
-0.311
|
— | — | — | — | — |
No JSON data available for plots.