Hg_chrom1_TN10mRNA_232
Organism: Heterodera glycines Gene Locus: chr1:1689090-1698286 Feature type: polypeptideProtein Sequence
Length: 704
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.057 | 0.991 | 1.265 | 0.441 | 1.042 | 1.02 | 0.626 | 1.136 | 0.789 | 0.96 | 1.055 | 1.253 | 0.947 | 0.874 | 0.928 | 1.319 | 1.956 | 0.689 | 0.656 | 0.543 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_225
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.980
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRIKRTK
|
— | — |
31-51
|
0.991
|
— | — |
0.000
|
— | — |
0.724
|
0.138
|
0.022
|
0.537
|
0.058
|
0.085
|
0.149
|
0.047
|
0.110
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001640
|
2.000
|
2.000
|
Hsc_gene_3001.t1;Hsc_gene_3001.t2
|
— | — |
P24861.1 G2/mitotic-specific cyclin-A [Patella vulgata]
|
KAI1704965.1 cyclin-A2 [Ditylenchus destructor]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.792|GO:0008150_0.764|GO:0110165_0.759|GO:0009987_0.688|GO:0005622_0.669|GO:0016020_0.587|GO:0043226_0.529|GO:0043229_0.509
|
IPR004367+506-696_514-574+|IPR006671+378-503+|IPR013763+413-497+|IPR036915+371-503_514-577+|IPR039361+361-571+
|
SM00385+413-497+|SM01332+506-696+
|
PF00134+378-503+Cyclin,_N-terminal_domain|PF02984+514-574+Cyclin,_C-terminal_domain
|
G3DSA:1.10.472.10:FF:000001+392-504+G2/mitotic-specific_cyclin
|
PTHR10177+361-571+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-329;562-704
|
1.000
|
330-561
|
7luo_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.620
|
77068.750
|
6.112
|
-4.000
|
26.989
|
8.381
|
56.392
|
43.608
|
13.778
|
13.210
|
57.102
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1129.552
|
164.755
|
474.060
|
905.605
|
1535.584
|
1331.993
|
1891.797
|
644.292
|
56.495
|
2293.889
|
1335.006
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.294
|
2.321
|
1.044
|
0.730
|
-0.190
|
0.516
|
-1.162
|
1.699
|
-3.738
|
4.081
|
— | — | — |
No JSON data available for plots.