Hg_chrom1_TN10mRNA_241
Organism: Heterodera glycines Gene Locus: chr1:1792898-1793566 Feature type: polypeptideProtein Sequence
Length: 172
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.811 | 1.622 | 1.057 | 0.0 | 1.841 | 0.894 | 0.623 | 0.581 | 1.421 | 0.786 | 2.114 | 1.026 | 1.938 | 0.894 | 0.712 | 0.831 | 0.381 | 0.529 | 0.447 | 1.197 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_233
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom1_TN10mRNA_241
|
21-pJ2_J3
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
PKRKKIEIKKEKG,KRFLEILAAFKKREI
|
— | — | — | — |
1-23
|
0.985
|
1.000
|
0.000
|
0.000
|
0.981
|
0.045
|
0.006
|
0.178
|
0.022
|
0.034
|
0.016
|
0.003
|
0.031
|
0.109
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005620
|
1.000
|
1.000
|
Hsc_gene_17861.t1
|
— | — |
Q9XIE1.3 Paired amphipathic helix protein Sin3-like 5 [Arabidopsis thaliana]
|
NP_001185267.1 SIN3-like 5 [Arabidopsis thaliana];AEE33635.1 SIN3-like 5 [Arabidopsis thaliana]
|
KAJ6229572
|
0.670
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003714|GO:0006355
|
— |
IPR003822+30-107_61-100+|IPR036600+41-108_45-105+|IPR039774+33-142+
|
— |
PF02671+61-100+Paired_amphipathic_helix_repeat
|
— |
PTHR12346+33-142+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
116-172
|
1.000
|
1-115
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.745
|
19925.550
|
8.280
|
2.000
|
35.465
|
12.791
|
54.070
|
45.930
|
18.605
|
16.860
|
41.279
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
374.250
|
1.071
|
12.478
|
247.520
|
66.552
|
17.622
|
3.634
|
1.491
|
349.214
|
1244.045
|
860.546
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.313
|
7.716
|
4.418
|
-1.925
|
-1.903
|
-2.282
|
-3.659
|
— | — | — |
-3.738
|
— | — |