Hg_chrom1_TN10mRNA_243
Organism: Heterodera glycines Gene Locus: chr1:1796694-1806507 Feature type: polypeptideProtein Sequence
Length: 609
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.668 | 2.329 | 0.746 | 0.226 | 1.149 | 1.6 | 0.684 | 2.299 | 0.693 | 0.51 | 1.194 | 1.739 | 0.775 | 1.863 | 1.039 | 0.751 | 0.942 | 0.697 | 0.884 | 1.159 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_235
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom1_TN10mRNA_243
|
17-ppJ2_pJ2
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RRKQEPMGNLRKRGDK,GPRPDKQRHQENRTKIRRKQEPMGNLRKRG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.139
|
0.144
|
0.251
|
0.206
|
0.295
|
0.047
|
0.108
|
0.033
|
0.202
|
0.696
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002899
|
1.000
|
2.000
|
Hsc_gene_17863.t1;Hsc_gene_17863.t2
|
— | — | — | — |
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.954|GO:0065007_0.894|GO:0032502_0.824|GO:0048856_0.824|GO:0050896_0.803|GO:0032501_0.799|GO:0006950_0.736|GO:0040007_0.700|GO:0065008_0.699|GO:0048589_0.694|GO:0031099_0.684|GO:0009611_0.680|GO:0042246_0.677|GO:0042060_0.676|GO:0050878_0.674|GO:0007596_0.670|GO:0007599_0.670|GO:0050817_0.670
|
IPR001304+348-537_355-508+|IPR016186+347-564+|IPR016187+341-465+
|
SM00034+348-537+
|
— | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-609
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.954
|
69545.290
|
9.517
|
26.000
|
28.571
|
12.479
|
55.829
|
44.171
|
17.570
|
11.002
|
51.560
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
4712.276
|
14.937
|
1112.842
|
1739.496
|
229.989
|
25.153
|
54.174
|
135.382
|
22619.575
|
2409.537
|
11070.982
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.993
|
6.728
|
0.752
|
-2.951
|
-3.178
|
1.119
|
2.327
|
-1.179
|
3.140
|
-3.535
|
-3.052
|
— | — |
No JSON data available for plots.