Hg_chrom1_TN10mRNA_248
Organism: Heterodera glycines Gene Locus: chr1:1822987-1824654 Feature type: polypeptideProtein Sequence
Length: 367
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.38 | 1.267 | 0.842 | 0.47 | 1.862 | 1.537 | 0.616 | 0.954 | 1.998 | 0.81 | 2.642 | 2.244 | 1.287 | 0.262 | 1.001 | 0.545 | 0.491 | 0.372 | 1.258 | 0.882 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_240
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom1_TN10mRNA_248
|
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
KKFGIKQNVSKERKV,KREIVEKFHKIKEKFK,KKKYYSGKEWHKIERK,RKVLTICEKMEKMKKY,KRQILKRFDQIYDKLKMK,KRQLKNGKTDEKIENRKRK
|
— | — | — | — |
1-24
|
0.970
|
0.931
|
0.000
|
0.000
|
0.864
|
0.090
|
0.007
|
0.466
|
0.038
|
0.014
|
0.014
|
0.005
|
0.066
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000278
|
9.000
|
0.000
|
0.000
|
— | — | — |
KAI3417802.1 hypothetical protein GPALN_012077 [Globodera pallida]
|
WP_257403417
|
0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
72-130
|
2.000
|
1-71;131-367
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.577
|
43980.050
|
10.168
|
27.500
|
40.054
|
11.172
|
58.311
|
41.689
|
24.251
|
15.804
|
30.518
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
476.389
|
0.852
|
16.013
|
84.374
|
28.416
|
3.621
|
1.826
|
1.666
|
776.756
|
1450.345
|
1161.664
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.012
|
6.509
|
2.506
|
-1.597
|
-2.957
|
— | — | — | — |
-3.053
|
-5.311
|
— | — |