Hg_chrom1_TN10mRNA_25
Organism: Heterodera glycines Gene Locus: chr1:234558-250516 Feature type: polypeptideProtein Sequence
Length: 2,190
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.632 | 1.933 | 0.863 | 0.567 | 1.385 | 1.3 | 0.304 | 1.279 | 1.705 | 1.543 | 1.487 | 1.88 | 1.763 | 0.492 | 0.634 | 0.731 | 0.614 | 0.623 | 1.089 | 0.846 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_25
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
mitochondria
|
KRQK,KKEEIKLKKKEKLKEKCK,KKEENEMETPKKEEIKLKK
|
26-47
|
0.996
|
— | — |
1-22
|
0.965
|
0.994
|
0.000
|
0.000
|
0.629
|
0.147
|
0.009
|
0.535
|
0.113
|
0.164
|
0.099
|
0.017
|
0.079
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002857
|
1.000
|
2.000
|
Hsc_gene_14938.t1;Hsc_gene_14939.t1
|
Hsc_gene_14939.t1;Hsc_gene_14940.t1
|
— | — |
KAI3420075.1 polynucleotide adenylyltransferase [Globodera pallida]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016779|GO:1990817
|
GO:0005575_0.718|GO:0110165_0.715|GO:0005622_0.684|GO:0016020_0.629|GO:0043226_0.629|GO:0043229_0.604|GO:0008150_0.593|GO:0043227_0.559|GO:0043231_0.551|GO:0003674_0.522
|
IPR002934+1685-1725+|IPR007012+1876-2017+|IPR043519+1639-1794_1666-1837+
|
— |
PF01909+1685-1725+Nucleotidyltransferase_domain|PF04928+1876-2017+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1649-2126+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-2190
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.553
|
257098.220
|
7.404
|
25.000
|
28.539
|
13.196
|
50.776
|
49.224
|
15.479
|
13.059
|
38.219
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1768.093
|
20.676
|
488.232
|
412.712
|
168.363
|
28.741
|
14.176
|
25.519
|
4551.934
|
3887.048
|
4171.999
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.334
|
4.183
|
— |
-1.323
|
-2.538
|
-1.016
|
— | — | — |
-3.292
|
-4.180
|
— | — |