Hg_chrom1_TN10mRNA_253
Organism: Heterodera glycines Gene Locus: chr1:1904237-1905434 Feature type: polypeptideProtein Sequence
Length: 371
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.313 | 1.567 | 0.637 | 0.279 | 1.662 | 1.797 | 0.61 | 0.539 | 2.456 | 0.728 | 2.818 | 1.744 | 1.273 | 0.311 | 0.935 | 0.385 | 0.442 | 0.408 | 1.244 | 1.348 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_245
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-pJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
KKKK,KREIVEKFHKIKEKVK,KKLGINQKKIYKWKRE,RKHSRKEWEEFRAKIK,KKIGVFENVSKKRKIL,LRKYKAKFGIKPKNKL,KKFTRKEWTKIEIKIAKK,KRIMLKQFDQIYSKLKMK
|
— | — | — | — |
1-24
|
0.985
|
1.000
|
0.000
|
0.000
|
0.862
|
0.122
|
0.013
|
0.462
|
0.087
|
0.016
|
0.016
|
0.009
|
0.089
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000278
|
9.000
|
0.000
|
0.000
|
— | — | — |
KAI3408412.1 hypothetical protein GPALN_010338 [Globodera pallida]
|
WP_285743659
|
0.320
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-371
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.767
|
44822.360
|
10.422
|
38.000
|
37.736
|
11.860
|
56.873
|
43.127
|
24.259
|
13.477
|
28.571
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
87.005
|
0.228
|
1.313
|
24.272
|
2.974
|
0.128
|
0.101
|
0.000
|
336.646
|
117.280
|
211.294
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
6.588
|
4.314
|
-3.061
|
-4.449
|
— | — | — | — | — |
-5.225
|
— | — |