Hg_chrom1_TN10mRNA_254
Organism: Heterodera glycines Gene Locus: chr1:1914740-1922343 Feature type: polypeptideProtein Sequence
Length: 718
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.085 | 1.166 | 0.76 | 1.057 | 0.975 | 1.536 | 0.464 | 1.602 | 0.929 | 1.299 | 0.76 | 1.147 | 1.161 | 1.42 | 1.649 | 1.074 | 0.868 | 0.633 | 0.536 | 0.41 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_246
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRRR,GEKKRSKRR,KRRSSSHHMILSDKRSRL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.751
|
0.092
|
0.016
|
0.627
|
0.055
|
0.054
|
0.031
|
0.043
|
0.126
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005621
|
1.000
|
1.000
|
Hsc_gene_17871.t1
|
Hsc_gene_17871.t1;Hsc_gene_17872.t1
|
— | — |
KAI1713985.1 rhoGAP domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007165
|
GO:0008150_0.958|GO:0065007_0.917|GO:0009987_0.862|GO:0050789_0.858|GO:0005575_0.801|GO:0110165_0.801|GO:0050794_0.745|GO:0005622_0.740|GO:0050896_0.663|GO:0003674_0.650|GO:0005488_0.647|GO:0051716_0.639|GO:0023052_0.625|GO:0007154_0.624|GO:0032502_0.623|GO:0048856_0.623|GO:0007165_0.601|GO:0005515_0.593|GO:0035556_0.552|GO:0141124_0.541|GO:0016020_0.540|GO:0007264_0.527|GO:0032501_0.519
|
IPR000198+407-610_418-612_457-572+|IPR002219+343-392_344-392+|IPR008936+401-610_408-575+|IPR046349+339-392+
|
SM00109+344-392+|SM00324+418-612+
|
PF00620+457-572+RhoGAP_domain
|
— |
PTHR46199+44-659+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
136-298;631-718
|
2.000
|
1-135;299-630
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.882
|
80650.040
|
9.261
|
33.500
|
26.323
|
9.471
|
50.139
|
49.861
|
16.295
|
10.028
|
49.861
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
272.988
|
27.752
|
72.702
|
53.631
|
30.134
|
49.627
|
583.541
|
32.809
|
16.479
|
863.140
|
500.285
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.161
|
0.815
|
— |
-0.867
|
0.738
|
3.566
|
-0.711
|
4.298
|
-5.816
|
— |
-4.433
|
— | — |
No JSON data available for plots.