Hg_chrom1_TN10mRNA_256
Organism: Heterodera glycines Gene Locus: chr1:1999372-2004876 Feature type: polypeptideProtein Sequence
Length: 281
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.703 | 0.993 | 1.423 | 0.982 | 0.949 | 0.73 | 0.847 | 0.712 | 1.423 | 1.491 | 1.402 | 1.884 | 1.285 | 0.411 | 0.654 | 1.068 | 0.933 | 0.539 | 1.095 | 1.151 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_248
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-25
|
0.998
|
1.000
|
0.000
|
0.000
|
0.662
|
0.329
|
0.086
|
0.697
|
0.175
|
0.049
|
0.072
|
0.126
|
0.104
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005623
|
1.000
|
1.000
|
Hsc_gene_17882.t1
|
Hsc_gene_17882.t1
|
— |
Q626I0.1 Probable FAD synthase [Caenorhabditis briggsae]
|
KAF7636478.1 PAPS_reduct domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824
|
GO:0005575_0.907|GO:0110165_0.901|GO:0005622_0.831|GO:0005737_0.795|GO:0008150_0.752|GO:0003674_0.670|GO:0008152_0.592|GO:0016020_0.569|GO:0005829_0.534|GO:0044281_0.518|GO:0009987_0.501
|
IPR002500+88-238_90-158_167-243+|IPR014729+43-276+
|
— |
PF01507+90-158_167-243+Phosphoadenosine_phosphosulfate_reductase_family
|
— |
PTHR23293+52-277+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
278-281
|
1.000
|
1-277
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.580
|
31670.350
|
6.133
|
-1.000
|
27.402
|
11.388
|
47.687
|
52.313
|
13.879
|
13.523
|
46.975
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
1921.485
|
9.971
|
47.266
|
461.794
|
365.855
|
85.162
|
128.101
|
41.647
|
62.143
|
7932.468
|
4559.471
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.016
|
5.399
|
3.395
|
-0.367
|
-2.089
|
0.598
|
-1.150
|
1.766
|
— | — | — | — | — |