SCN Proteipedia

Hg_chrom1_TN10mRNA_257

Organism: Heterodera glycines Gene Locus: chr1:2005320-2060804 Feature type: polypeptide

Protein Sequence

Length: 3,175 (Signal peptide: 1-22)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.74	1.633	0.876	0.597	0.719	1.203	0.814	1.717	1.267	1.205	0.387	1.075	1.461	1.03	1.388	1.111	0.955	0.873	1.478	0.908	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_249	—	—	1.111	1.000	1.000	1.000	1.000	2.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	15-Not_Clustered	0.903

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	secreted	signal_peptide\|transmembrane_domain	cell_membrane	nucleus	KRRR,RHRR,RRKRR,RKRRK,RKPSIRKSLITRNRRN	—	—	—	—	1-22	0.996	0.999	1.000	0.000	0.209	0.061	0.024	0.212	0.160	0.401	0.306	0.069	0.773	0.222

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005624	1.000	1.000	Hsc_gene_17883.t1	Hsc_gene_17883.t1;Hsc_gene_17884.t1;Hsc_gene_17884.t2;Hsc_gene_17885.t1;Hsc_gene_17886.t1;Hsc_gene_22972.t1	—	M9NDE3.1 Protein bark beetle [Drosophila melanogaster]	KAI1714979.1 scavenger receptor cysteine-rich domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0016020	GO:0005575_0.921\|GO:0110165_0.917\|GO:0008150_0.875\|GO:0009987_0.806\|GO:0016020_0.716\|GO:0065007_0.703\|GO:0050896_0.681\|GO:0071944_0.655\|GO:0032502_0.612\|GO:0048856_0.612\|GO:0032501_0.607\|GO:0005886_0.567\|GO:0007275_0.536\|GO:0006950_0.516	IPR001190+123-230_127-229_1058-1168_1068-1167_2008-2121_2018-2120+\|IPR006626+297-319_321-343_346-368_564-586_588-611_613-635_757-779_782-804_1218-1240_1244-1265_1266-1288_1467-1488_1571-1593_2217-2239_2447-2471_2482-2503+\|IPR011050+283-367_559-861_1517-1701+\|IPR012334+281-415_535-922_1464-1743+\|IPR016186+2756-2883+\|IPR016187+2756-2876+\|IPR017448+123-230_1058-1168_2008-2121+\|IPR036772+118-236_120-235_1056-1168_1056-1172_2006-2120_2006-2121+\|IPR053243+30-3057+	SM00202+123-230_1058-1168_2008-2121+\|SM00710+297-319_321-343_346-368_564-586_588-611_613-635_757-779_782-804_1218-1240_1244-1265_1266-1288_1467-1488_1571-1593_2217-2239_2447-2471_2482-2503+	PF00530+127-229_1068-1167_2018-2120+Scavenger_receptor_cysteine-rich_domain	—	PTHR47653+30-3057+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	3042-3175	1.000	1-3041	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.840	358237.550	7.860	61.500	21.921	13.701	47.244	52.756	12.787	9.134	51.496

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	blue	4004.052	374.893	276.254	296.392	327.436	774.374	567.655	1335.107	1036.319	15258.446	9163.248

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.672	-0.476	0.212	—	1.257	-0.441	0.682	-1.095	-2.499	-1.651	-3.897	—	—

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