Hg_chrom1_TN10mRNA_26
Organism: Heterodera glycines Gene Locus: chr1:250879-257979 Feature type: polypeptideProtein Sequence
Length: 1,205
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.531 | 1.93 | 0.724 | 0.458 | 1.162 | 1.319 | 0.375 | 1.162 | 1.918 | 1.413 | 1.232 | 1.367 | 2.259 | 0.622 | 0.728 | 0.96 | 0.735 | 0.541 | 1.213 | 1.001 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_26
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KRIQMWEQLQKMERK,KRENETKFAYTMRKSRKFK
|
— | — | — | — |
1-22
|
0.971
|
1.000
|
0.000
|
0.000
|
0.669
|
0.217
|
0.012
|
0.491
|
0.188
|
0.132
|
0.131
|
0.044
|
0.117
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005558
|
1.000
|
1.000
|
Hsc_gene_14937.t1
|
Hsc_gene_14937.t1
|
— | — |
KAI3420075.1 polynucleotide adenylyltransferase [Globodera pallida]
|
GMI85184
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0016779|GO:0031123|GO:1990817
|
GO:0005575_0.781|GO:0110165_0.776|GO:0005622_0.724|GO:0016020_0.659|GO:0043226_0.620|GO:0043229_0.614|GO:0043227_0.588|GO:0043231_0.570
|
IPR007012+899-1024+|IPR011068+1044-1123+|IPR043519+676-821_686-863+
|
— |
PF04928+899-1024+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+721-1170+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1205
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.716
|
141501.950
|
8.415
|
23.000
|
24.979
|
15.436
|
49.627
|
50.373
|
14.025
|
10.954
|
39.336
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkolivegreen
|
203.121
|
1.404
|
22.521
|
56.851
|
16.768
|
2.735
|
3.243
|
1.107
|
139.117
|
745.080
|
485.381
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.770
|
5.206
|
1.447
|
-1.797
|
-2.596
|
— | — | — | — | — |
-5.301
|
— | — |