Hg_chrom1_TN10mRNA_263
Organism: Heterodera glycines Gene Locus: chr1:2099895-2101183 Feature type: polypeptideProtein Sequence
Length: 372
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.438 | 1.75 | 0.733 | 0.278 | 1.792 | 1.792 | 0.512 | 0.403 | 2.151 | 0.618 | 2.81 | 2.056 | 1.493 | 0.207 | 0.658 | 0.422 | 0.441 | 0.448 | 1.654 | 1.265 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_255
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
KKLKINQNVSKERKM,KKMGTNQTKIYKWKKE,KRIMLKQFDQIYAKLKMK,RKIAKKMGTNQTKIYKWKK,KKKRETVEKFHKIKEKVKQMGKKYSKKEWQKIERKIAKKMG
|
— | — | — | — |
1-18
|
0.958
|
0.989
|
0.000
|
0.000
|
0.879
|
0.095
|
0.007
|
0.428
|
0.059
|
0.018
|
0.013
|
0.006
|
0.068
|
0.107
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000278
|
9.000
|
0.000
|
0.000
|
— | — | — |
KAI3411791.1 hypothetical protein GPALN_001856, partial [Globodera pallida]
|
WP_052589827
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-372
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.608
|
44977.150
|
10.178
|
27.500
|
37.366
|
12.634
|
57.527
|
42.473
|
22.581
|
14.785
|
30.108
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
117.396
|
0.000
|
6.063
|
17.682
|
4.441
|
0.251
|
0.410
|
0.000
|
185.046
|
364.006
|
287.309
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.947
|
8.572
|
1.643
|
-2.036
|
-4.128
|
— | — | — | — |
-3.221
|
-6.173
|
— | — |