Hg_chrom1_TN10mRNA_267
Organism: Heterodera glycines Gene Locus: chr1:2127464-2128273 Feature type: polypeptideProtein Sequence
Length: 162
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.79 | 0.718 | 0.673 | 0.851 | 0.926 | 0.791 | 0.441 | 1.235 | 1.509 | 2.085 | 1.216 | 1.452 | 1.886 | 0.594 | 0.756 | 0.97 | 1.214 | 0.935 | 0.0 | 0.726 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_259
|
— | — |
2.778
|
2.000
|
3.000
|
2.000
|
2.000
|
2.000
|
5.000
|
1.000
|
3.000
|
5.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — |
26-67
|
0.966
|
— | — | — | — |
0.001
|
— | — |
0.063
|
0.157
|
0.045
|
0.084
|
0.361
|
0.169
|
0.210
|
0.073
|
0.208
|
0.759
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005626
|
2.000
|
0.000
|
0.000
|
— | — | — |
KAI3421801.1 hypothetical protein GPALN_012345 [Globodera pallida]
|
MDI6754878
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-162
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.668
|
18288.630
|
8.828
|
6.000
|
23.457
|
11.728
|
43.827
|
56.173
|
14.198
|
9.259
|
43.210
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
234.521
|
2.262
|
22.659
|
9.461
|
8.955
|
0.367
|
0.404
|
0.827
|
309.204
|
777.275
|
576.673
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.085
|
1.919
|
-1.152
|
— |
-4.574
|
— | — | — | — |
-4.959
|
-6.296
|
— | — |
No JSON data available for plots.