SCN Proteipedia

Hg_chrom1_TN10mRNA_27

Organism: Heterodera glycines Gene Locus: chr1:259887-294195 Feature type: polypeptide

Protein Sequence

Length: 1,773

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.069	0.879	0.728	0.603	0.602	1.229	1.021	1.579	0.865	1.09	0.547	1.393	1.238	1.139	1.289	1.209	1.461	0.923	0.998	0.514	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_27	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	RRVGPDGTVLKWQRLRPK	—	—	—	—	—	—	0.012	—	—	0.121	0.033	0.023	0.229	0.223	0.283	0.220	0.028	0.669	0.276

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002858	1.000	2.000	Hsc_gene_14936.t1;Hsc_gene_14936.t2	Hsc_gene_14935.t1	—	Q3KN41.1 Neurexin 1 [Drosophila melanogaster]	KAI3411056.1 LamG [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005509	GO:0008150_0.909\|GO:0005575_0.862\|GO:0110165_0.860\|GO:0009987_0.821\|GO:0032501_0.777\|GO:0003674_0.761\|GO:0016020_0.745\|GO:0071944_0.742\|GO:0032502_0.712\|GO:0048856_0.712\|GO:0007275_0.683\|GO:0005886_0.675\|GO:0048731_0.654\|GO:0005488_0.638\|GO:0071840_0.595\|GO:0016043_0.593\|GO:0007399_0.581\|GO:0065007_0.560\|GO:0050789_0.537\|GO:0005515_0.533	IPR000742+253-290_774-810+\|IPR001791+30-223_36-197_50-200_58-197_312-515_338-479_339-486_347-483_523-755_529-715_543-717_551-716_841-1000_895-999+\|IPR001881+219-290_760-810+\|IPR013320+36-204_276-490_504-715_796-1002+\|IPR050372+158-512+	SM00179+219-290_760-810+\|SM00282+50-200_339-486_543-717_841-1000+	PF02210+58-197_347-483_551-716_895-999+Laminin_G_domain	—	PTHR15036+158-512+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1120-1563;1634-1773	2.000	1-1119;1564-1633	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.912	192227.950	9.598	69.000	20.699	10.660	46.644	53.356	13.085	7.614	56.684

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	blue	2073.217	1349.150	1974.585	1033.222	268.752	234.192	351.720	707.546	848.504	6214.260	3914.650

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.321	-0.522	-0.826	-1.975	—	0.596	1.495	-0.869	-2.972	—	-4.079	—	—

No JSON data available for plots.

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