Hg_chrom1_TN10mRNA_272
Organism: Heterodera glycines Gene Locus: chr1:2159464-2164853 Feature type: polypeptideProtein Sequence
Length: 216
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.453 | 2.046 | 1.178 | 0.0 | 0.926 | 1.068 | 0.827 | 3.009 | 0.309 | 0.313 | 0.772 | 0.817 | 0.257 | 1.692 | 0.756 | 1.455 | 0.987 | 1.403 | 0.0 | 0.136 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_263
|
— | — |
1.889
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
4.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
Hgg-15|AF344862.1#tn20jg15213.t1
|
— | — | — |
Hg_chrom1_TN10mRNA_272
|
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
nucleus
|
— | — | — | — | — | — |
1-23
|
0.994
|
1.000
|
0.000
|
0.000
|
0.462
|
0.180
|
0.009
|
0.417
|
0.122
|
0.294
|
0.074
|
0.004
|
0.374
|
0.192
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001644
|
4.000
|
0.000
|
0.000
|
— | — | — |
AAP30776.1 putative gland protein G34B08 [Heterodera glycines]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-216
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.864
|
22531.280
|
6.435
|
-0.500
|
26.852
|
7.407
|
56.019
|
43.981
|
14.815
|
12.037
|
68.981
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
9258.676
|
67.804
|
17133.712
|
6861.200
|
903.516
|
27.706
|
24.033
|
635.469
|
37958.822
|
2417.552
|
17649.525
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7.751
|
6.522
|
-1.212
|
-2.957
|
-5.012
|
— |
4.444
|
-4.596
|
3.887
|
-2.299
|
— | — | — |