Hg_chrom1_TN10mRNA_275
Organism: Heterodera glycines Gene Locus: chr1:2196357-2202355 Feature type: polypeptideProtein Sequence
Length: 634
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.009 | 1.944 | 0.803 | 0.87 | 0.578 | 2.103 | 0.507 | 0.946 | 1.192 | 1.343 | 0.574 | 1.856 | 1.008 | 0.94 | 0.837 | 1.465 | 0.853 | 0.98 | 0.485 | 0.232 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_265
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — |
4-74
|
0.954
|
— | — |
0.000
|
— | — |
0.794
|
0.147
|
0.011
|
0.518
|
0.052
|
0.052
|
0.058
|
0.022
|
0.102
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005627
|
1.000
|
1.000
|
Hsc_gene_25555.t1
|
— | — |
O02151.3 Nuclear hormone receptor family member nhr-14 [Caenorhabditis elegans]
|
XP_020302303.1 nuclear hormone receptor family member nhr-14 [Loa loa];EFO20938.2 nuclear hormone receptor family member nhr-14 [Loa loa]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0000978|GO:0003700|GO:0006355|GO:0008270|GO:0043565
|
GO:0008150_0.872|GO:0065007_0.795|GO:0009987_0.787|GO:0050789_0.786|GO:0050794_0.759|GO:0005575_0.752|GO:0003674_0.729|GO:0110165_0.724|GO:0005488_0.718|GO:0008152_0.689|GO:0019222_0.689|GO:0031323_0.689|GO:0044237_0.689|GO:0043170_0.678|GO:0009058_0.677|GO:0009059_0.677|GO:0044249_0.677|GO:0060255_0.677|GO:0009889_0.670|GO:0031326_0.670|GO:0010467_0.669|GO:0044238_0.669|GO:0080090_0.669|GO:0010556_0.668|GO:0006139_0.659|GO:0034654_0.659|GO:0016070_0.658|GO:0032774_0.658|GO:0090304_0.658|GO:0141187_0.658|GO:0005622_0.657|GO:0006351_0.656|GO:0010468_0.656|GO:0019219_0.653|GO:0051252_0.653|GO:0043226_0.649|GO:2001141_0.642|GO:0006355_0.638|GO:0097159_0.633|GO:0043229_0.631|GO:0003676_0.589|GO:0003677_0.581|GO:0043565_0.581|GO:0003690_0.535|GO:1990837_0.535|GO:0050896_0.529|GO:0016020_0.524|GO:0006357_0.521|GO:0006366_0.521
|
IPR000536+186-423_212-394_213-404+|IPR001628+43-114_43-118_45-112_46-62_46-72_62-77_95-103_103-111+|IPR001723+107-117_213-234_234-250_324-339_382-399+|IPR013088+38-142+|IPR035500+169-409_190-409+|IPR049636+46-121+|IPR050274+41-406+
|
SM00399+43-114+|SM00430+212-394+
|
PF00104+213-404+Ligand-binding_domain_of_nuclear_hormone_receptor|PF00105+45-112+Zinc_finger,_C4_type_(two_domains)
|
G3DSA:3.30.50.10:FF:000030+38-142+Nuclear_Hormone_Receptor_family
|
PTHR24083+41-406+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
413-456;631-634
|
2.000
|
1-412;457-630
|
3cbb_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.847
|
69291.750
|
7.353
|
6.000
|
17.666
|
6.940
|
49.685
|
50.315
|
9.779
|
7.886
|
55.047
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
799.163
|
10.940
|
123.897
|
126.340
|
78.339
|
157.171
|
153.074
|
352.293
|
568.799
|
2693.968
|
1783.181
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.273
|
3.393
|
— |
-0.721
|
1.018
|
— |
1.049
|
-1.057
|
— | — |
-4.498
|
— | — |
No JSON data available for plots.