Hg_chrom1_TN10mRNA_281
Organism: Heterodera glycines Gene Locus: chr1:2232488-2236716 Feature type: polypeptideProtein Sequence
Length: 546
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.681 | 1.363 | 0.833 | 0.189 | 1.404 | 1.08 | 0.698 | 1.282 | 1.384 | 1.411 | 1.082 | 1.508 | 1.628 | 0.775 | 1.009 | 0.706 | 0.811 | 1.11 | 0.986 | 0.7 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_270
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-21
|
0.981
|
1.000
|
0.000
|
0.000
|
0.171
|
0.245
|
0.091
|
0.408
|
0.540
|
0.213
|
0.199
|
0.014
|
0.228
|
0.518
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005629
|
1.000
|
1.000
|
Hsc_gene_25538.t1
|
Hsc_gene_25538.t1
|
— |
Q22295.2 Putative UDP-glucuronosyltransferase ugt-50 [Caenorhabditis elegans]
|
KAI1702768.1 UDP-glucoronosyl and UDP-glucosyl transferase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008194
|
GO:0008150_0.830|GO:0003674_0.732|GO:0005575_0.691|GO:0009987_0.685|GO:0110165_0.670|GO:0003824_0.652|GO:0016020_0.605|GO:0005622_0.593|GO:0005737_0.570|GO:0016740_0.568|GO:0043226_0.553|GO:0008152_0.546|GO:0016757_0.534|GO:0016758_0.533|GO:0043229_0.532|GO:0008194_0.525|GO:0050896_0.522|GO:0043227_0.507
|
IPR002213+329-524_365-539+|IPR035595+432-474+|IPR050271+148-528+
|
— |
PF00201+329-524+UDP-glucoronosyl_and_UDP-glucosyl_transferase
|
— |
PTHR48043+148-528+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-546
|
8xfh_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.579
|
62429.750
|
6.746
|
2.000
|
27.656
|
12.088
|
47.619
|
52.381
|
14.652
|
13.004
|
43.956
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
37.792
|
9.057
|
8.126
|
0.757
|
1.785
|
5.009
|
8.721
|
3.844
|
2.056
|
149.810
|
86.487
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-3.724
|
-3.324
|
— | — | — | — |
1.323
|
-6.215
|
— |
-5.878
|
— | — |