Hg_chrom1_TN10mRNA_286
Organism: Heterodera glycines Gene Locus: chr1:2280685-2282096 Feature type: polypeptideProtein Sequence
Length: 341
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.409 | 1.159 | 1.066 | 0.708 | 1.124 | 1.429 | 0.384 | 1.613 | 1.303 | 1.506 | 1.377 | 1.208 | 1.874 | 0.564 | 1.077 | 1.215 | 0.817 | 0.844 | 0.902 | 0.431 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_275
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.700
|
0.191
|
0.010
|
0.406
|
0.409
|
0.105
|
0.152
|
0.030
|
0.103
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000235
|
9.000
|
1.000
|
Hsc_gene_20530.t1
|
— | — | — |
MDA8002553.1 DUF659 domain-containing protein [Alphaproteobacteria bacterium]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.906|GO:0110165_0.906|GO:0005622_0.860|GO:0016020_0.846|GO:0003674_0.835|GO:0043226_0.826|GO:0043229_0.811|GO:0005737_0.780|GO:0043227_0.779|GO:0005488_0.775|GO:0043231_0.768|GO:0005515_0.747|GO:0042802_0.666|GO:0005634_0.631|GO:0031974_0.579|GO:0043233_0.578|GO:0070013_0.578|GO:0031981_0.575|GO:0005654_0.560
|
IPR012337+83-338+|IPR052035+3-336+
|
— | — | — |
PTHR46481+3-336+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-21
|
1.000
|
22-341
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.721
|
39685.630
|
8.778
|
11.500
|
30.205
|
12.610
|
54.252
|
45.748
|
17.595
|
12.610
|
41.642
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
23.835
|
0.149
|
3.133
|
14.272
|
5.361
|
1.271
|
0.201
|
1.118
|
69.974
|
42.234
|
54.122
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.146
|
6.409
|
2.291
|
-1.453
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.