Hg_chrom1_TN10mRNA_289
Organism: Heterodera glycines Gene Locus: chr1:2300248-2304026 Feature type: polypeptideProtein Sequence
Length: 560
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.706 | 1.661 | 0.844 | 0.185 | 1.31 | 1.053 | 0.765 | 1.161 | 1.389 | 1.231 | 1.163 | 1.996 | 1.538 | 0.859 | 0.948 | 0.587 | 0.966 | 0.92 | 0.824 | 0.788 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_278
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.544
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — |
7-28
|
0.912
|
— | — | — | — |
0.000
|
— | — |
0.203
|
0.272
|
0.156
|
0.366
|
0.508
|
0.135
|
0.197
|
0.028
|
0.265
|
0.553
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005631
|
1.000
|
1.000
|
Hsc_gene_25535.t1
|
Hsc_gene_25535.t1
|
— |
Q22295.2 Putative UDP-glucuronosyltransferase ugt-50 [Caenorhabditis elegans]
|
KAI1702768.1 UDP-glucoronosyl and UDP-glucosyl transferase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008194
|
GO:0008150_0.829|GO:0003674_0.741|GO:0005575_0.668|GO:0003824_0.660|GO:0009987_0.658|GO:0110165_0.644|GO:0005622_0.608|GO:0016740_0.577|GO:0016020_0.573|GO:0005737_0.570|GO:0008152_0.569|GO:0043226_0.559|GO:0043229_0.543|GO:0050896_0.540|GO:0016757_0.532|GO:0016758_0.532|GO:0008194_0.525|GO:0015020_0.521|GO:0043227_0.515
|
IPR002213+365-538_379-553+|IPR035595+446-488+|IPR050271+119-542+
|
— |
PF00201+365-538+UDP-glucoronosyl_and_UDP-glucosyl_transferase
|
— |
PTHR48043+119-542+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-560
|
8sfy_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.682
|
63827.170
|
7.347
|
5.500
|
27.143
|
11.607
|
48.393
|
51.607
|
14.643
|
12.500
|
45.357
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
38.625
|
23.983
|
75.979
|
1.638
|
0.972
|
120.442
|
40.047
|
77.668
|
1.028
|
40.440
|
23.549
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.432
|
-4.015
|
-5.434
|
— |
6.942
|
-1.577
|
-0.745
|
-0.809
|
— | — | — | — | — |
No JSON data available for plots.