SCN Proteipedia

Hg_chrom1_TN10mRNA_29

Organism: Heterodera glycines Gene Locus: chr1:300641-311168 Feature type: polypeptide

Protein Sequence

Length: 1,123

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.818	1.532	0.874	0.768	0.92	2.009	0.731	1.291	0.989	1.492	0.661	1.1	1.088	0.634	1.199	0.916	1.168	0.742	0.616	0.943	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_29	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Not_Clustered	0.618

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|cell_membrane	—	—	—	—	—	—	—	—	0.000	—	—	0.229	0.141	0.020	0.667	0.164	0.323	0.244	0.028	0.567	0.074

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005560	1.000	1.000	Hsc_gene_14931.t1	Hsc_gene_14931.t1	—	Q45FX5.1 Protein vav-1 [Caenorhabditis elegans]	KAI1716207.1 rhoGEF domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005085\|GO:0005515\|GO:0035556	GO:0008150_0.945\|GO:0009987_0.904\|GO:0065007_0.859\|GO:0050789_0.844\|GO:0050794_0.833\|GO:0005575_0.809\|GO:0110165_0.807\|GO:0050896_0.783\|GO:0051716_0.754\|GO:0005622_0.724\|GO:0007154_0.709\|GO:0023052_0.704\|GO:0007165_0.693\|GO:0003674_0.692\|GO:0005488_0.652\|GO:0048583_0.625\|GO:0048518_0.602\|GO:0005515_0.599\|GO:0032502_0.599\|GO:0048856_0.599\|GO:0005737_0.579\|GO:0016043_0.561\|GO:0071840_0.561\|GO:0010646_0.536\|GO:0016020_0.535\|GO:0023051_0.534\|GO:0032501_0.533\|GO:0009966_0.518\|GO:0035556_0.508	IPR000219+246-443_247-441_250-441_250-442+\|IPR000980+883-966_885-960_885-989+\|IPR001331+391-416+\|IPR001452+981-1049_984-1048_1001-1045+\|IPR001715+11-125_12-123_13-120+\|IPR001849+466-631_473-633+\|IPR002219+642-685+\|IPR011993+453-637+\|IPR035899+241-463_243-451+\|IPR036028+981-1068+\|IPR036860+868-982_873-976+\|IPR036872+9-174_11-134+\|IPR046349+635-686+	SM00033+13-120+\|SM00233+473-633+\|SM00252+883-966+\|SM00325+250-442+\|SM00326+984-1048+	PF00017+885-960+SH2_domain\|PF00307+12-123+Calponin_homology_(CH)_domain\|PF00621+250-441+RhoGEF_domain\|PF14604+1001-1045+Variant_SH3_domain\|PF22697+469-530+SOS1/NGEF-like_PH_domain	—	PTHR45818+12-1045+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	174-222;1049-1123	2.000	1-173;223-1048	2d86_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.697	126527.870	7.393	13.500	23.152	10.508	51.113	48.887	12.823	10.329	48.531

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	733.391	1051.110	623.178	412.849	332.301	474.586	479.811	589.622	392.062	1428.242	984.164

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.984	-1.485	-0.485	-0.344	0.529	—	0.208	—	—	—	—	—	—

No JSON data available for plots.

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