Hg_chrom1_TN10mRNA_290
Organism: Heterodera glycines Gene Locus: chr1:2304462-2307486 Feature type: polypeptideProtein Sequence
Length: 493
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.826 | 1.415 | 0.811 | 0.14 | 0.947 | 1.248 | 0.724 | 1.116 | 1.758 | 1.233 | 1.137 | 1.432 | 2.085 | 0.663 | 0.911 | 0.927 | 0.632 | 0.983 | 1.404 | 0.597 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_279
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — |
3-53
|
0.759
|
— | — | — | — |
0.001
|
— | — |
0.099
|
0.090
|
0.003
|
0.257
|
0.773
|
0.484
|
0.727
|
0.004
|
0.184
|
0.433
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005632
|
1.000
|
1.000
|
Hsc_gene_25534.t1
|
Hsc_gene_25534.t1
|
— |
Q63ZR6.1 UDP-glucuronosyltransferase 3A1 [Xenopus laevis]
|
KAI1702768.1 UDP-glucoronosyl and UDP-glucosyl transferase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008194
|
GO:0008150_0.819|GO:0003674_0.726|GO:0005575_0.706|GO:0110165_0.685|GO:0009987_0.641|GO:0016020_0.628|GO:0003824_0.610|GO:0005622_0.563|GO:0071944_0.555|GO:0016740_0.554|GO:0005737_0.545|GO:0043226_0.545|GO:0050896_0.538|GO:0016757_0.531|GO:0008152_0.528|GO:0005886_0.527|GO:0008194_0.522|GO:0043229_0.520|GO:0016758_0.507|GO:0043227_0.504
|
IPR002213+336-488_364-486+|IPR035595+431-473+|IPR050271+135-489+
|
— |
PF00201+336-488+UDP-glucoronosyl_and_UDP-glucosyl_transferase
|
— |
PTHR48043+135-489+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-493
|
8sfy_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.795
|
56119.800
|
9.747
|
14.500
|
24.341
|
13.590
|
45.639
|
54.361
|
14.199
|
10.142
|
44.422
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
226.011
|
4.232
|
20.966
|
2.388
|
1.574
|
381.045
|
131.961
|
17.947
|
8.293
|
772.536
|
445.003
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.081
|
— |
-3.028
|
— |
7.937
|
-1.522
|
-4.522
|
3.021
|
— | — |
-6.835
|
— | — |
No JSON data available for plots.