Hg_chrom1_TN10mRNA_293
Organism: Heterodera glycines Gene Locus: chr1:2412286-2421466 Feature type: polypeptideProtein Sequence
Length: 1,165
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.339 | 1.637 | 0.843 | 0.533 | 1.516 | 1.167 | 0.531 | 1.288 | 1.698 | 1.148 | 1.821 | 1.01 | 1.121 | 0.66 | 0.876 | 1.067 | 0.858 | 0.676 | 0.858 | 0.959 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_282
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-pJ2
|
0.975
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
KRRK,KRKYSTYSKEEKLKKL
|
— | — | — | — |
1-19
|
0.980
|
0.898
|
0.000
|
0.000
|
0.825
|
0.088
|
0.009
|
0.387
|
0.061
|
0.028
|
0.046
|
0.022
|
0.062
|
0.014
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000720
|
2.000
|
4.000
|
Hsc_gene_16796.t1;Hsc_gene_25527.t1;Hsc_gene_25529.t1;Hsc_gene_25529.t2
|
— | — |
Q6P1G2.1 Lysine-specific demethylase 2B [Mus musculus]
|
KAH7731530.1 jmjC domain containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.953|GO:0009987_0.915|GO:0003674_0.820|GO:0071840_0.751|GO:0016043_0.738|GO:0005575_0.715|GO:0110165_0.711|GO:0005622_0.684|GO:0043226_0.656|GO:0043229_0.646|GO:0006325_0.643|GO:0006338_0.643|GO:0003824_0.615|GO:0016020_0.613|GO:0065007_0.605|GO:0140096_0.588|GO:0050789_0.578|GO:0043227_0.565|GO:0050794_0.565|GO:0140993_0.561|GO:0032451_0.555|GO:0032452_0.555|GO:0140457_0.555|GO:0008152_0.546|GO:0043170_0.546|GO:0043231_0.541|GO:0009058_0.540|GO:0005488_0.536|GO:0044237_0.533|GO:0044249_0.524|GO:0141052_0.519|GO:0009059_0.518|GO:0044238_0.513
|
IPR003347+802-980_808-980_864-963+|IPR041070+968-1056+|IPR050690+666-1078+
|
SM00558+808-980+
|
PF02373+864-963+JmjC_domain,_hydroxylase|PF17811+968-1056+Jumonji_helical_domain
|
— |
PTHR23123+666-1078+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
361-465
|
2.000
|
1-360;466-1165
|
7uv9_K
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.838
|
135393.700
|
9.446
|
45.000
|
32.618
|
10.987
|
56.910
|
43.090
|
18.884
|
13.734
|
41.202
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1521.459
|
7.026
|
301.709
|
507.844
|
151.129
|
15.929
|
6.897
|
19.355
|
4627.020
|
2807.411
|
3587.243
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.195
|
6.037
|
0.859
|
-1.779
|
-3.233
|
-1.199
|
— |
-1.352
|
— |
-3.029
|
-4.071
|
— | — |