Hg_chrom1_TN10mRNA_294
Organism: Heterodera glycines Gene Locus: chr1:2423291-2428700 Feature type: polypeptideProtein Sequence
Length: 282
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.99 | 1.072 | 0.387 | 0.856 | 0.887 | 0.818 | 1.309 | 1.064 | 0.788 | 1.198 | 0.591 | 1.669 | 1.182 | 1.091 | 2.099 | 1.418 | 0.756 | 0.591 | 0.273 | 0.73 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_283
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KRSMTLGRLSFRPGKR,KRTAALGRVGFRPGKR,KRSIATGRVGFRPGKR,KRWSFPVSGAYAHDRQNRR,GFRPGKRSMAVGRTGFRPGKRSIATGRVGFRPGK
|
— | — |
55-75
|
0.994
|
— | — |
0.000
|
— | — |
0.053
|
0.100
|
0.068
|
0.110
|
0.105
|
0.086
|
0.192
|
0.007
|
0.190
|
0.857
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002905
|
2.000
|
1.000
|
Hsc_gene_25528.t1
|
Hsc_gene_25528.t1
|
— | — |
KAF7627226.1 Neuropeptide-like protein 2 [Meloidogyne graminicola]
|
No
|
0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
188-282
|
1.000
|
1-187
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.889
|
30742.040
|
10.713
|
22.000
|
23.759
|
9.220
|
46.099
|
53.901
|
16.312
|
7.447
|
52.837
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
724.388
|
502.756
|
2229.102
|
806.873
|
156.907
|
110.113
|
23.133
|
1274.276
|
26.534
|
1235.611
|
717.435
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.919
|
0.545
|
-1.357
|
-2.392
|
-0.498
|
-2.239
|
3.432
|
-5.641
|
-5.691
|
5.135
|
-2.702
|
— | — |
No JSON data available for plots.