Hg_chrom1_TN10mRNA_295
Organism: Heterodera glycines Gene Locus: chr1:2424899-2428700 Feature type: polypeptideProtein Sequence
Length: 206
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.298 | 0.79 | 0.441 | 0.335 | 0.971 | 0.747 | 1.156 | 0.971 | 0.971 | 1.181 | 0.588 | 1.428 | 1.214 | 1.027 | 2.18 | 1.179 | 0.955 | 0.736 | 0.373 | 0.714 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_283
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
mitochondria
|
KRSMTLGRLSFRPGKR,KRTAALGRVGFRPGKR,KRSMAVGRTGFRPGKR,KRWSFPVSGAYAHDRQNRR
|
39-60
|
0.995
|
— | — | — |
0.523
|
0.129
|
0.000
|
— |
0.223
|
0.258
|
0.227
|
0.109
|
0.051
|
0.006
|
0.016
|
0.014
|
0.076
|
0.857
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002905
|
2.000
|
1.000
|
Hsc_gene_25528.t1
|
Hsc_gene_25528.t1
|
— | — |
KAF7627226.1 Neuropeptide-like protein 2 [Meloidogyne graminicola]
|
No
|
0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
124-206
|
1.000
|
1-123
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.808
|
22493.710
|
10.998
|
15.000
|
24.757
|
9.223
|
45.146
|
54.854
|
16.505
|
8.252
|
51.942
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
724.388
|
502.756
|
2229.102
|
806.873
|
156.907
|
110.113
|
23.133
|
1274.276
|
26.534
|
1235.611
|
717.435
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.919
|
0.545
|
-1.357
|
-2.392
|
-0.498
|
-2.239
|
3.432
|
-5.641
|
-5.691
|
5.135
|
-2.702
|
— | — |