Hg_chrom1_TN10mRNA_298
Organism: Heterodera glycines Gene Locus: chr1:2448254-2450000 Feature type: polypeptideProtein Sequence
Length: 309
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.489 | 2.258 | 1.883 | 0.112 | 0.701 | 1.743 | 0.539 | 0.0 | 1.151 | 1.006 | 1.177 | 1.142 | 1.259 | 0.996 | 1.651 | 1.156 | 0.371 | 0.392 | 0.249 | 1.904 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_286
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-Not_Clustered
|
0.778
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-23
|
0.974
|
0.986
|
0.000
|
0.000
|
0.315
|
0.236
|
0.051
|
0.296
|
0.088
|
0.035
|
0.038
|
0.021
|
0.147
|
0.933
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005635
|
1.000
|
1.000
|
Hsc_gene_25525.t1
|
Hsc_gene_25525.t1
|
— | — |
KAI1731066.1 hypothetical protein Ddc_03794 [Ditylenchus destructor]
|
WP_340834911
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-174;288-309
|
1.000
|
175-287
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.892
|
36242.160
|
9.086
|
4.000
|
30.421
|
11.327
|
57.282
|
42.718
|
15.858
|
14.563
|
47.249
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
642.436
|
2.967
|
360.163
|
152.389
|
49.103
|
9.290
|
4.266
|
124.552
|
3045.191
|
263.241
|
1455.505
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.689
|
5.538
|
-1.134
|
-1.664
|
-2.389
|
— |
3.649
|
-4.730
|
3.662
|
-4.158
|
— | — | — |