Hg_chrom1_TN10mRNA_299
Organism: Heterodera glycines Gene Locus: chr1:2458284-2464608 Feature type: polypeptideProtein Sequence
Length: 461
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.782 | 0.958 | 0.592 | 0.449 | 0.542 | 1.224 | 0.439 | 0.759 | 2.217 | 1.729 | 0.953 | 1.531 | 1.567 | 0.667 | 0.398 | 1.023 | 0.96 | 1.315 | 1.335 | 1.531 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_287
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.101
|
0.072
|
0.010
|
0.115
|
0.477
|
0.449
|
0.331
|
0.054
|
0.626
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005636
|
1.000
|
1.000
|
Hsc_gene_25524.t1
|
Hsc_gene_25524.t1
|
— |
Q17766.3 Folate transporter 1 [Caenorhabditis elegans]
|
KAI1713308.1 reduced folate carrier domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0051180|GO:0090482
|
GO:0008150_0.959|GO:0009987_0.921|GO:0006810_0.911|GO:0051179_0.911|GO:0051234_0.911|GO:0005575_0.861|GO:0110165_0.861|GO:0016020_0.844|GO:0071944_0.825|GO:0005886_0.822|GO:0055085_0.764|GO:0071705_0.755|GO:0003674_0.739|GO:0005215_0.715|GO:0022857_0.715|GO:0051180_0.670|GO:0008152_0.571|GO:0035461_0.568|GO:0044237_0.563|GO:0090482_0.551|GO:0044281_0.526|GO:0006766_0.505|GO:0006767_0.502
|
IPR002666+2-436_2-448_3-458+|IPR036259+3-449_5-456+
|
— |
PF01770+2-436+Reduced_folate_carrier
|
— |
PTHR10686+3-458+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-461
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.681
|
52353.970
|
9.036
|
11.500
|
16.269
|
14.100
|
38.178
|
61.822
|
9.761
|
6.508
|
44.252
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
286.146
|
44.929
|
126.411
|
112.866
|
81.190
|
110.374
|
163.952
|
32.840
|
99.992
|
924.684
|
571.245
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.262
|
1.191
|
— |
-0.511
|
0.460
|
— |
-1.856
|
2.451
|
-3.333
|
— |
-3.287
|
— | — |
No JSON data available for plots.