Hg_chrom1_TN10mRNA_3
Organism: Heterodera glycines Gene Locus: chr1:94771-103177 Feature type: polypeptideProtein Sequence
Length: 694
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.072 | 1.106 | 1.205 | 0.547 | 1.225 | 1.145 | 0.789 | 0.937 | 0.704 | 0.974 | 0.939 | 0.932 | 1.281 | 1.247 | 1.088 | 1.07 | 0.898 | 1.092 | 0.665 | 0.551 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_3
|
— | — |
1.778
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
3.000
|
1.000
|
2.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.841
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRSECGTYELRLKNK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.756
|
0.052
|
0.016
|
0.572
|
0.029
|
0.016
|
0.030
|
0.009
|
0.126
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002852
|
3.000
|
0.000
|
0.000
|
— | — |
Q23551.3 Twitchin [Caenorhabditis elegans]
|
KAI3421286.1 IG-like protein, partial [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005515|GO:0005524|GO:0006468
|
GO:0005575_0.884|GO:0110165_0.878|GO:0008150_0.835|GO:0005622_0.823|GO:0003674_0.788|GO:0009987_0.697|GO:0043226_0.692|GO:0043229_0.674|GO:0005737_0.631|GO:0065007_0.575|GO:0050789_0.565|GO:0005488_0.564|GO:0071840_0.529|GO:0016043_0.522|GO:0016020_0.505
|
IPR000719+429-694+|IPR003961+47-130_47-139_49-129_49-144+|IPR011009+427-635+|IPR013783+42-144+|IPR036116+37-142+
|
SM00060+47-130+
|
PF00041+49-129+Fibronectin_type_III_domain|PF12330+399-671+Haspin_like_kinase_domain
|
G3DSA:2.60.40.10:FF:000003+46-142+Titin_isoform_E
|
PTHR24419+212-671+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-86;137-390
|
2.000
|
87-136;391-694
|
8g4l_n
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.643
|
76251.430
|
5.302
|
-10.500
|
27.378
|
9.222
|
49.568
|
50.432
|
13.401
|
13.977
|
55.476
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
33.318
|
9.600
|
19.681
|
12.037
|
13.380
|
12.206
|
15.021
|
11.634
|
110.644
|
27.697
|
63.246
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.