Hg_chrom1_TN10mRNA_300
Organism: Heterodera glycines Gene Locus: chr1:2467443-2471289 Feature type: polypeptideProtein Sequence
Length: 386
(Signal peptide: 1-17)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.904 | 1.627 | 0.848 | 0.357 | 0.907 | 1.329 | 0.864 | 2.85 | 1.151 | 1.12 | 0.51 | 1.372 | 1.367 | 0.697 | 1.057 | 0.851 | 0.977 | 1.021 | 1.196 | 0.838 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_288
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.509
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cell_membrane
|
— | — | — | — | — | — |
1-17
|
0.975
|
1.000
|
0.000
|
0.000
|
0.040
|
0.049
|
0.025
|
0.114
|
0.110
|
0.209
|
0.210
|
0.122
|
0.791
|
0.483
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005637
|
1.000
|
1.000
|
Hsc_gene_25522.t1
|
Hsc_gene_25522.t1
|
— |
Q10462.3 Putative carbonic anhydrase 5 [Caenorhabditis elegans]
|
KAI1723410.1 eukaryotic-type carbonic anhydrase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004089|GO:0008270
|
GO:0003674_0.810|GO:0005575_0.745|GO:0110165_0.745|GO:0008150_0.701|GO:0003824_0.658|GO:0005622_0.545|GO:0016020_0.519|GO:0005737_0.518|GO:0016829_0.509|GO:0016835_0.502|GO:0016836_0.502
|
IPR001148+75-329_77-327_84-327+|IPR018338+178-194+|IPR023561+75-323+|IPR036398+70-336_73-327+
|
SM01057+77-327+
|
PF00194+84-327+Eukaryotic-type_carbonic_anhydrase
|
— |
PTHR18952+75-323+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
37-100
|
2.000
|
1-36;101-386
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.650
|
43432.830
|
6.901
|
5.000
|
24.352
|
15.026
|
48.446
|
51.554
|
14.249
|
10.104
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
433.715
|
46.050
|
1281.388
|
155.274
|
62.994
|
745.289
|
255.136
|
855.015
|
24.664
|
603.577
|
355.471
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.574
|
1.616
|
-2.939
|
-1.335
|
3.581
|
-1.537
|
— |
-1.602
|
— | — | — | — | — |