Hg_chrom1_TN10mRNA_303
Organism: Heterodera glycines Gene Locus: chr1:2490788-2504472 Feature type: polypeptideProtein Sequence
Length: 423
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.825 | 2.034 | 1.289 | 0.0 | 1.143 | 1.879 | 0.816 | 1.655 | 0.841 | 0.735 | 0.967 | 0.834 | 0.722 | 0.864 | 1.061 | 1.756 | 0.891 | 0.43 | 0.727 | 0.556 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_291
|
— |
Hg_chrom1_TN10gene_291
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom1_TN10mRNA_303
|
17-Not_Clustered
|
0.644
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
LRRSKTKKETRKEKEESSSAGSSSRSKTKKDDTTKEKGKN
|
— | — | — | — |
1-24
|
0.989
|
1.000
|
0.000
|
0.000
|
0.633
|
0.089
|
0.007
|
0.565
|
0.108
|
0.168
|
0.121
|
0.036
|
0.153
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005640
|
1.000
|
1.000
|
Hsc_gene_25518.t1
|
— | — | — |
WBO26506.1 UIM1 [Heterodera glycines]
|
WP_089403051
|
0.860
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-423
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.850
|
46770.450
|
6.157
|
-3.000
|
28.842
|
8.747
|
62.648
|
37.352
|
14.894
|
13.948
|
54.846
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
2361.291
|
34.930
|
378.286
|
535.026
|
146.368
|
68.723
|
43.950
|
32.863
|
8232.178
|
3691.462
|
5637.483
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.210
|
3.801
|
0.609
|
-1.900
|
-1.077
|
-0.640
|
-1.169
|
— | — |
-3.791
|
-4.490
|
— | — |