SCN Proteipedia

Hg_chrom1_TN10mRNA_308

Organism: Heterodera glycines Gene Locus: chr1:2529045-2550593 Feature type: polypeptide

Protein Sequence

Length: 1,383 (Signal peptide: 1-14)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.017	0.958	0.947	0.923	0.807	1.502	0.637	1.663	1.093	1.378	0.482	0.978	1.125	1.043	1.417	1.033	1.067	0.909	1.224	0.638	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_296	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	0.997

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	secreted	signal_peptide\|transmembrane_domain	cell_membrane	nucleus	KKHHQKR,RRRCFLFKAFLRHNKK	—	—	—	—	1-14	0.934	1.000	1.000	0.000	0.170	0.063	0.022	0.251	0.183	0.418	0.249	0.078	0.754	0.107

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005643	1.000	1.000	Hsc_gene_25507.t1	Hsc_gene_25506.t1;Hsc_gene_25507.t1	—	P28192.3 Tyrosine-protein phosphatase 4 [Caenorhabditis elegans]	KAI1732781.1 protein-tyrosine phosphatase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004725\|GO:0005515\|GO:0006470\|GO:0016311	GO:0008150_0.891\|GO:0005575_0.862\|GO:0110165_0.861\|GO:0009987_0.843\|GO:0003674_0.786\|GO:0016020_0.758\|GO:0071944_0.717\|GO:0005886_0.700\|GO:0065007_0.667\|GO:0050789_0.648\|GO:0032501_0.637\|GO:0050794_0.631\|GO:0032502_0.578\|GO:0003824_0.573\|GO:0048856_0.556\|GO:0016043_0.545\|GO:0071840_0.545\|GO:0140096_0.534\|GO:0016787_0.531\|GO:0050896_0.515\|GO:0016788_0.508\|GO:0007275_0.505	IPR000242+787-1117_788-1115_837-1112_865-872_881-901_1051-1069_1082-1097_1098-1108+\|IPR000387+1053-1106+\|IPR003595+977-1114+\|IPR003961+158-241_158-251_158-255_161-246_256-342_259-354_357-446_358-451_358-456_359-459+\|IPR013783+153-251_252-355_356-465+\|IPR016130+1054-1064+\|IPR029021+767-1126_825-1120+\|IPR036116+157-356_349-461+\|IPR050713+160-471+	SM00060+158-241_256-342_357-446+\|SM00194+787-1117+\|SM00404+977-1114+	PF00041+161-246_358-451+Fibronectin_type_III_domain\|PF00102+837-1112+Protein-tyrosine_phosphatase	—	PTHR46957+160-471+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-1383	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.697	154638.940	7.576	24.000	23.500	11.135	47.216	52.784	13.449	10.051	51.265

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	654.683	1022.725	565.511	197.464	72.762	85.277	344.758	253.671	180.285	1775.714	1091.959

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.085	-2.510	-1.409	-1.473	—	2.025	1.466	0.585	-3.415	—	-4.129	—	—

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