Hg_chrom1_TN10mRNA_311
Organism: Heterodera glycines Gene Locus: chr1:2863992-2865820 Feature type: polypeptideProtein Sequence
Length: 337
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.932 | 0.966 | 0.917 | 0.716 | 1.088 | 1.522 | 0.848 | 1.039 | 1.319 | 1.363 | 0.54 | 1.746 | 1.154 | 0.799 | 1.696 | 0.763 | 0.73 | 0.809 | 1.598 | 0.785 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_299
|
— | — |
0.889
|
2.000
|
2.000
|
1.000
|
— | — | — |
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.699
|
0.167
|
0.128
|
0.505
|
0.196
|
0.039
|
0.065
|
0.016
|
0.115
|
0.116
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002908
|
2.000
|
1.000
|
Hsc_gene_13667.t1
|
Hsc_gene_13667.t1
|
— |
Q9N3E2.1 Male abnormal protein mab-31 [Caenorhabditis elegans]
|
XP_002642078.1 Protein CBG18017 [Caenorhabditis briggsae];CAP35545.1 Protein CBG18017 [Caenorhabditis briggsae]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.940|GO:0009987_0.878|GO:0005575_0.841|GO:0110165_0.840|GO:0065007_0.812|GO:0050789_0.796|GO:0005622_0.783|GO:0050794_0.780|GO:0050896_0.775|GO:0016020_0.756|GO:0032501_0.756|GO:0032502_0.747|GO:0048856_0.747|GO:0051716_0.740|GO:0007275_0.731|GO:0043226_0.723|GO:0043229_0.717|GO:0007154_0.713|GO:0023052_0.712|GO:0007165_0.704|GO:0009719_0.690|GO:0022414_0.689|GO:0007166_0.688|GO:0009653_0.688|GO:0043227_0.685|GO:0003006_0.683|GO:0071495_0.679|GO:0007167_0.675|GO:0070848_0.675|GO:0007548_0.674|GO:0043231_0.674|GO:0071363_0.674|GO:0007178_0.670|GO:0007179_0.670|GO:0045138_0.670|GO:0046661_0.670|GO:0071559_0.670|GO:0071560_0.670|GO:0090598_0.670|GO:0141091_0.670|GO:0005634_0.603
|
IPR024445+221-336_240-335+|IPR053164+98-337+
|
SM01126+221-336+
|
PF12762+240-335+ISXO2-like_transposase_domain
|
— |
PTHR47163+98-337+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
336-337
|
1.000
|
1-335
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.666
|
38339.890
|
7.644
|
4.500
|
25.519
|
10.979
|
45.401
|
54.599
|
13.947
|
11.573
|
45.697
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
19.118
|
8.396
|
55.730
|
10.017
|
3.731
|
2.120
|
0.609
|
16.287
|
39.282
|
17.848
|
27.034
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.496
|
— |
-2.363
|
-1.469
|
— | — |
2.837
|
-4.601
|
— | — | — | — | — |
No JSON data available for plots.