Hg_chrom1_TN10mRNA_316
Organism: Heterodera glycines Gene Locus: chr1:2934191-2935223 Feature type: polypeptideProtein Sequence
Length: 229
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.016 | 1.32 | 0.794 | 0.452 | 0.291 | 0.896 | 0.468 | 1.092 | 0.776 | 1.003 | 0.265 | 0.514 | 1.456 | 2.771 | 2.139 | 1.747 | 1.002 | 0.728 | 0.672 | 0.257 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_303
|
— | — |
1.556
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
4.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRVKRAAAPTPRAR
|
77-113
|
0.905
|
68-91
|
0.997
|
— | — |
0.000
|
— | — |
0.445
|
0.109
|
0.034
|
0.660
|
0.191
|
0.141
|
0.205
|
0.063
|
0.125
|
0.190
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000495
|
6.000
|
1.000
|
Hsc_gene_7626.t1
|
— | — |
P34477.1 Probable ubiquitin-conjugating enzyme E2 7 [Caenorhabditis elegans]
|
KAI3412015.1 ubiquitin-conjugating enzyme E2 G1 [Globodera pallida]
|
KNE57430
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.843|GO:0005575_0.803|GO:0110165_0.797|GO:0003674_0.746|GO:0005622_0.700|GO:0008152_0.653|GO:0043170_0.653|GO:0009987_0.651|GO:0044238_0.640|GO:0016020_0.639|GO:0043226_0.609|GO:0043229_0.589|GO:0019538_0.587|GO:0005737_0.582|GO:0043227_0.556|GO:0003824_0.551|GO:0140096_0.544|GO:0016740_0.542|GO:0016746_0.538|GO:0016755_0.535|GO:0019787_0.535|GO:0043231_0.528
|
IPR000608+49-212_107-206_115-207+|IPR016135+104-218_107-214+|IPR050113+107-211+
|
SM00212+35-212+
|
PF00179+107-206+Ubiquitin-conjugating_enzyme
|
— |
PTHR24067+107-211+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-74;190-229
|
1.000
|
75-189
|
1pzv_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.967
|
25090.360
|
11.847
|
16.500
|
20.524
|
9.170
|
48.035
|
51.965
|
14.410
|
6.114
|
61.572
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
brown
|
1.721
|
11.518
|
2.034
|
1.120
|
1.755
|
2.280
|
0.814
|
0.559
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.738
|
-3.498
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.