Hg_chrom1_TN10mRNA_320
Organism: Heterodera glycines Gene Locus: chr1:3518937-3522133 Feature type: polypeptideProtein Sequence
Length: 864
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.781 | 1.723 | 0.715 | 0.599 | 1.64 | 1.128 | 0.331 | 1.1 | 1.698 | 1.251 | 1.403 | 1.974 | 1.222 | 0.957 | 0.992 | 0.761 | 0.797 | 0.666 | 1.157 | 0.34 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_307
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.861
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKSSAISREALLKLKRT,KRLVINQLETPEEEAKRKQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.716
|
0.154
|
0.009
|
0.382
|
0.063
|
0.028
|
0.032
|
0.006
|
0.096
|
0.132
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_19156.t1
|
— | — |
KAF7639390.1 PAP_central domain-containing protein, partial [Meloidogyne graminicola]
|
XP_046119141
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.694|GO:0110165_0.688|GO:0005622_0.642|GO:0016020_0.627|GO:0043226_0.602|GO:0008150_0.573|GO:0043229_0.573|GO:0003674_0.566|GO:0043227_0.539|GO:0043231_0.503
|
IPR007012+588-736+
|
— |
PF04928+588-736+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+587-756+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-255
|
1.000
|
256-864
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.660
|
99702.010
|
7.882
|
12.500
|
30.093
|
9.259
|
52.083
|
47.917
|
16.319
|
13.773
|
42.130
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
pink
|
282.539
|
7.811
|
181.910
|
328.953
|
139.161
|
31.043
|
30.270
|
312.680
|
109.286
|
767.208
|
485.241
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.314
|
5.260
|
0.963
|
-1.274
|
-2.149
|
— |
3.234
|
-3.234
|
-2.920
|
— |
-2.261
|
— | — |
No JSON data available for plots.