Hg_chrom1_TN10mRNA_321
Organism: Heterodera glycines Gene Locus: chr1:3711316-3712816 Feature type: polypeptideProtein Sequence
Length: 365
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.988 | 1.593 | 1.345 | 0.472 | 1.096 | 0.913 | 0.359 | 1.096 | 1.766 | 1.444 | 0.955 | 0.967 | 1.142 | 0.685 | 1.006 | 1.37 | 0.719 | 0.664 | 1.264 | 0.403 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_308
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.659
|
0.215
|
0.030
|
0.428
|
0.266
|
0.182
|
0.149
|
0.090
|
0.060
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001646
|
3.000
|
1.000
|
Hsc_gene_8976.t1
|
— | — |
Q27395.1 Protein lin-15B [Caenorhabditis elegans]
|
KAF7635668.1 Dimer_Tnp_hAT domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0005575_0.892|GO:0110165_0.892|GO:0005622_0.859|GO:0008150_0.767|GO:0032502_0.559|GO:0048856_0.559|GO:0016020_0.557|GO:0032501_0.550|GO:0043226_0.538|GO:0007275_0.533|GO:0043229_0.530|GO:0009791_0.506
|
IPR008906+267-339+|IPR012337+12-340+|IPR052717+2-341+
|
— |
PF05699+267-339+hAT_family_C-terminal_dimerisation_region
|
— |
PTHR46169+2-341+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
348-365
|
1.000
|
1-347
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.532
|
41082.550
|
5.299
|
-6.000
|
27.397
|
9.315
|
51.781
|
48.219
|
13.425
|
13.973
|
49.041
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
brown
|
269.219
|
247.774
|
412.940
|
450.241
|
426.401
|
485.597
|
215.603
|
665.557
|
5.529
|
84.645
|
50.738
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.508
|
0.725
|
0.233
|
— |
0.203
|
-1.163
|
0.350
|
-1.486
|
— |
6.598
|
— | — | — |
No JSON data available for plots.