Hg_chrom1_TN10mRNA_330
Organism: Heterodera glycines Gene Locus: chr1:3961527-3962588 Feature type: polypeptideProtein Sequence
Length: 181
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.992 | 0.899 | 1.205 | 0.191 | 2.118 | 0.992 | 1.118 | 0.0 | 0.368 | 0.448 | 2.93 | 1.625 | 0.153 | 0.956 | 0.113 | 0.631 | 0.453 | 0.837 | 0.0 | 0.0 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_316
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
Gland4|KJ825715.1#X12jg20755.t1
|
32E03|AF5000361#op50jg4000t1
|
Hsc_gene_15002;Hsc_gene_16080;Hsc_gene_3587;Hsc_gene_15008;Hsc_gene_24982
|
— | — |
2-pJ2_J3_J4_Female
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KKEGKKGAVASPAKGKASPKGASPAKGKAAKGGKKDAKKAGKKDGKGKKDKKEKPVKKAGKGKNAAKKDKTKNKKAPAAAKPK
|
— | — | — | — |
1-23
|
0.994
|
1.000
|
0.000
|
0.000
|
0.729
|
0.010
|
0.005
|
0.537
|
0.045
|
0.058
|
0.217
|
0.000
|
0.108
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002910
|
2.000
|
1.000
|
Hsc_gene_3587.t1
|
Hsc_gene_16080.t1;Hsc_gene_24982.t1
|
— | — |
QPO14705.1 effector protein GLAND4, partial [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-181
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.742
|
18872.220
|
7.947
|
1.000
|
39.227
|
0.552
|
54.144
|
45.856
|
19.890
|
19.337
|
55.249
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
4473.314
|
0.467
|
2.456
|
586.620
|
1484.074
|
136.970
|
281.839
|
75.113
|
2394.959
|
16811.700
|
10633.097
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
10.182
|
7.992
|
1.308
|
-3.424
|
1.054
|
-0.982
|
2.055
|
— | — | — | — | — |