Hg_chrom1_TN10mRNA_332
Organism: Heterodera glycines Gene Locus: chr1:3977692-3978272 Feature type: polypeptideProtein Sequence
Length: 80
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.436 | 0.0 | 0.0 | 3.017 | 0.625 | 1.603 | 0.298 | 1.875 | 1.111 | 2.365 | 0.758 | 1.471 | 1.389 | 0.721 | 3.061 | 0.714 | 0.82 | 0.758 | 1.923 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_318
|
— | — |
1.556
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.480
|
0.627
|
0.007
|
0.415
|
0.133
|
0.045
|
0.131
|
0.108
|
0.055
|
0.623
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000280
|
4.000
|
5.000
|
Hsc_gene_14387.t1;Hsc_gene_16083.t1;Hsc_gene_25083.t1;Hsc_gene_2766.t1;Hsc_gene_663.t1
|
— | — | — | — |
No
|
0.390
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-80
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.974
|
9594.700
|
11.654
|
14.500
|
27.500
|
11.250
|
43.750
|
56.250
|
23.750
|
3.750
|
33.750
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
11.090
|
0.313
|
23.582
|
10.907
|
0.652
|
26.674
|
0.810
|
37.176
|
1.382
|
9.938
|
6.271
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.035
|
5.011
|
-1.004
|
-4.081
|
5.353
|
-5.031
|
— |
-5.378
|
— | — | — | — | — |
No JSON data available for plots.