Hg_chrom1_TN10mRNA_334
Organism: Heterodera glycines Gene Locus: chr1:3993559-3997862 Feature type: polypeptideProtein Sequence
Length: 484
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.601 | 1.345 | 0.714 | 0.712 | 0.895 | 2.278 | 0.836 | 1.756 | 1.286 | 0.81 | 0.657 | 1.702 | 1.55 | 1.192 | 0.928 | 1.269 | 0.508 | 0.845 | 0.954 | 1.215 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_320
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.004
|
— | — |
0.138
|
0.239
|
0.041
|
0.344
|
0.270
|
0.253
|
0.368
|
0.013
|
0.322
|
0.692
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001649
|
3.000
|
1.000
|
Hsc_gene_2768.t1
|
Hsc_gene_2768.t1;Hsc_gene_2768.t2
|
— |
Q9XTR8.1 Lipase ZK262.3 [Caenorhabditis elegans]
|
KAH7724951.1 Lipase family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006629
|
GO:0003674_0.869|GO:0005575_0.846|GO:0110165_0.842|GO:0003824_0.712|GO:0016020_0.693|GO:0016787_0.691|GO:0005622_0.688|GO:0016788_0.664|GO:0052689_0.650|GO:0043226_0.643|GO:0043229_0.629|GO:0008150_0.610|GO:0043227_0.560|GO:0005737_0.547|GO:0043231_0.536
|
IPR002921+216-345+|IPR029058+146-439_156-434+
|
— |
PF01764+216-345+Lipase_(class_3)
|
— |
PTHR45908+140-441+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
84-148
|
2.000
|
1-83;149-484
|
4tgl_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.832
|
54965.900
|
7.202
|
6.500
|
21.694
|
14.463
|
48.347
|
51.653
|
12.397
|
9.298
|
47.727
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
53.881
|
9.410
|
61.995
|
27.025
|
20.302
|
49.212
|
26.279
|
197.930
|
13.095
|
78.851
|
50.670
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.483
|
1.381
|
-1.086
|
— |
1.290
|
-0.895
|
1.906
|
-2.772
|
— | — | — | — | — |
No JSON data available for plots.