Hg_chrom1_TN10mRNA_339
Organism: Heterodera glycines Gene Locus: chr1:4020199-4021151 Feature type: polypeptideProtein Sequence
Length: 201
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.694 | 1.967 | 0.271 | 0.172 | 0.663 | 0.893 | 0.237 | 0.498 | 3.096 | 1.614 | 0.678 | 1.756 | 2.626 | 0.478 | 0.812 | 0.853 | 1.631 | 0.302 | 1.148 | 1.317 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_325
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
21-61
|
0.933
|
— | — | — | — |
0.000
|
— | — |
0.221
|
0.055
|
0.040
|
0.061
|
0.313
|
0.244
|
0.207
|
0.030
|
0.736
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000281
|
1.000
|
8.000
|
Hsc_gene_25505.t1;Hsc_gene_25505.t2;Hsc_gene_2770.t1;Hsc_gene_2771.t1;Hsc_gene_2772.t1;Hsc_gene_2772.t2;Hsc_gene_2773.t1;Hsc_gene_2778.t1
|
— | — | — |
KAI3420008.1 hypothetical protein GPALN_003347 [Globodera pallida]
|
No
|
-0.390
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR019408+1-132+
|
— |
PF10292+1-132+Serpentine_type_7TM_GPCR_receptor_class_ab_chemoreceptor
|
— |
PTHR23128+2-195+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-201
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.769
|
23538.700
|
9.833
|
7.000
|
14.925
|
16.418
|
42.786
|
57.214
|
9.453
|
5.473
|
38.806
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
salmon
|
15.612
|
0.000
|
3.506
|
0.000
|
0.000
|
0.997
|
0.000
|
1.923
|
0.000
|
65.894
|
37.654
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.145
|
— |
-6.558
|
— | — | — | — |
-4.962
|
— | — |
-10.170
|
— | — |
No JSON data available for plots.