Hg_chrom1_TN10mRNA_342
Organism: Heterodera glycines Gene Locus: chr1:4298579-4301849 Feature type: polypeptideProtein Sequence
Length: 304
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.803 | 0.841 | 0.359 | 0.794 | 0.384 | 0.843 | 0.705 | 1.316 | 2.778 | 1.556 | 0.449 | 2.322 | 1.827 | 0.759 | 0.806 | 1.269 | 1.079 | 0.797 | 1.518 | 0.871 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_328
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.117
|
0.125
|
0.029
|
0.099
|
0.268
|
0.247
|
0.268
|
0.066
|
0.587
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000358
|
4.000
|
4.000
|
Hsc_gene_15692.t1;Hsc_gene_8634.t1;Hsc_gene_8634.t2;Hsc_gene_8634.t3
|
Hsc_gene_14811.t2;Hsc_gene_25681.t1;Hsc_gene_3554.t1;Hsc_gene_3554.t2
|
— |
Q03567.2 Uncharacterized transporter slc-17.2 [Caenorhabditis elegans]
|
KAI6223819.1 Sodium-dependent phosphate transport protein 1 [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0008150_0.941|GO:0009987_0.844|GO:0005575_0.769|GO:0110165_0.769|GO:0003674_0.757|GO:0051179_0.732|GO:0006810_0.724|GO:0051234_0.724|GO:0016020_0.713|GO:0055085_0.697|GO:0005215_0.654|GO:0022857_0.654|GO:0071944_0.633|GO:0005886_0.626
|
IPR011701+2-230+|IPR036259+1-83_2-298_110-303+
|
— |
PF07690+2-230+Major_Facilitator_Superfamily
|
— |
PTHR45757+3-298+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-304
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.840
|
34004.390
|
9.193
|
12.000
|
13.816
|
14.145
|
36.184
|
63.816
|
9.539
|
4.276
|
45.395
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
493.198
|
0.452
|
18.346
|
15.012
|
23.421
|
25.983
|
194.163
|
12.698
|
1.028
|
2048.192
|
1170.836
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.101
|
4.899
|
— |
0.611
|
— |
2.909
|
-1.140
|
4.075
|
-10.795
|
3.768
|
-6.147
|
— | — |
No JSON data available for plots.