Hg_chrom1_TN10mRNA_343
Organism: Heterodera glycines Gene Locus: chr1:4314613-4316898 Feature type: polypeptideProtein Sequence
Length: 224
(Signal peptide: 1-17)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.571 | 1.038 | 0.974 | 2.309 | 1.116 | 0.916 | 0.957 | 0.67 | 1.687 | 1.146 | 1.285 | 0.525 | 1.364 | 0.515 | 0.638 | 1.02 | 0.878 | 0.676 | 0.0 | 1.707 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_329
|
— | — |
1.556
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
cell_membrane
|
— | — | — | — | — | — |
1-17
|
1.000
|
1.000
|
1.000
|
1.000
|
0.048
|
0.108
|
0.005
|
0.133
|
0.139
|
0.105
|
0.141
|
0.040
|
0.791
|
0.500
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000280
|
4.000
|
5.000
|
Hsc_gene_14387.t1;Hsc_gene_16083.t1;Hsc_gene_25083.t1;Hsc_gene_2766.t1;Hsc_gene_663.t1
|
— | — | — | — |
MDB5206600
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-224
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.671
|
25054.710
|
6.638
|
0.500
|
25.000
|
12.054
|
45.536
|
54.464
|
12.946
|
12.054
|
49.107
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
34.320
|
0.231
|
181.824
|
7.821
|
1.454
|
19.331
|
1.623
|
95.994
|
0.000
|
34.544
|
19.740
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
9.400
|
4.951
|
-4.431
|
-2.441
|
3.728
|
-3.565
|
2.211
|
-5.747
|
— | — | — | — | — |