Hg_chrom1_TN10mRNA_351
Organism: Heterodera glycines Gene Locus: chr1:4667567-4670587 Feature type: polypeptideProtein Sequence
Length: 419
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.805 | 1.499 | 0.738 | 1.234 | 0.915 | 1.04 | 0.483 | 0.955 | 1.326 | 1.387 | 0.832 | 1.544 | 2.718 | 0.78 | 1.51 | 0.784 | 1.017 | 0.47 | 0.734 | 0.632 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_337
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.870
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
KRSVTELFLNIKMKKKSRE
|
24-83
|
0.841
|
— | — | — | — |
0.000
|
— | — |
0.517
|
0.255
|
0.024
|
0.404
|
0.289
|
0.064
|
0.099
|
0.028
|
0.114
|
0.165
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000724
|
4.000
|
2.000
|
Hsc_gene_13938.t1;Hsc_gene_13938.t2
|
— | — | — |
KAH7720101.1 Protein Y48G1A.4 [Aphelenchus avenae]
|
No
|
-0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0032040
|
— |
IPR007276+155-419_156-419+
|
— |
PF04147+155-419+Nop14-like_family
|
— |
PTHR23183+156-419+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
393-419
|
1.000
|
1-392
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.783
|
48625.270
|
9.073
|
18.000
|
24.344
|
14.797
|
46.539
|
53.461
|
14.797
|
9.547
|
43.914
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
83.814
|
142.698
|
149.819
|
113.100
|
87.228
|
96.799
|
123.835
|
136.649
|
25.837
|
28.511
|
27.365
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.472
|
-0.294
|
-0.405
|
— |
0.364
|
0.394
|
— | — | — | — | — | — |
No JSON data available for plots.