Hg_chrom1_TN10mRNA_353
Organism: Heterodera glycines Gene Locus: chr1:4687109-4690634 Feature type: polypeptideProtein Sequence
Length: 275
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.719 | 1.268 | 0.331 | 1.63 | 0.545 | 1.585 | 0.216 | 2.364 | 1.051 | 1.474 | 0.826 | 0.642 | 2.323 | 1.399 | 1.558 | 0.935 | 0.656 | 0.937 | 0.839 | 0.749 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_339
|
— | — |
1.444
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.886
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
PKSSNRRKKK
|
19-51
|
0.990
|
1-25
|
0.998
|
— | — |
0.000
|
— | — |
0.351
|
0.217
|
0.127
|
0.315
|
0.493
|
0.144
|
0.358
|
0.048
|
0.080
|
0.160
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001651
|
4.000
|
0.000
|
0.000
|
— | — |
O95070.2 Protein YIF1A [Homo sapiens]
|
KAK6021904.1 Hrf1 family protein, partial [Ostertagia ostertagi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005789|GO:0006888
|
GO:0005575_0.900|GO:0110165_0.898|GO:0005622_0.836|GO:0016020_0.815|GO:0043226_0.788|GO:0043229_0.772|GO:0043227_0.752|GO:0005737_0.743|GO:0043231_0.729|GO:0071944_0.702|GO:0005886_0.700|GO:0008150_0.660|GO:0005773_0.618|GO:0012505_0.615|GO:0009987_0.611|GO:0005794_0.561
|
IPR005578+106-192_124-192+
|
— |
PF03878+124-192+YIF1
|
— |
PTHR14083+106-192+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-275
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.512
|
32117.580
|
10.316
|
28.500
|
22.909
|
16.727
|
45.091
|
54.909
|
17.818
|
5.091
|
44.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
brown
|
56.490
|
56.737
|
60.074
|
37.154
|
52.727
|
190.203
|
71.673
|
83.798
|
53.341
|
0.000
|
22.860
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.748
|
-0.584
|
0.476
|
1.862
|
-1.398
|
-1.285
|
— | — | — | — | — | — |
No JSON data available for plots.