Hg_chrom1_TN10mRNA_354
Organism: Heterodera glycines Gene Locus: chr1:4693565-4695930 Feature type: polypeptideProtein Sequence
Length: 146
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.274 | 0.796 | 0.623 | 0.472 | 1.37 | 1.581 | 0.815 | 1.37 | 0.913 | 1.573 | 1.142 | 1.612 | 0.951 | 0.922 | 1.258 | 0.783 | 0.337 | 0.83 | 1.581 | 0.403 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_340
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.564
|
0.360
|
0.034
|
0.454
|
0.138
|
0.046
|
0.018
|
0.005
|
0.078
|
0.110
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000726
|
4.000
|
2.000
|
Hsc_gene_11327.t1;Hsc_gene_18423.t1
|
— | — |
Q9UKD2.2 mRNA turnover protein 4 homolog [Homo sapiens]
|
RCN51614.1 putative ribosomal protein L10 [Ancylostoma caninum]
|
No
|
-0.410
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.620|GO:0110165_0.611|GO:0005622_0.579|GO:0008150_0.558|GO:0016020_0.533|GO:0003674_0.531|GO:0043226_0.529|GO:0009987_0.511|GO:0043229_0.510
|
IPR040637+45-116+|IPR043164+44-118+|IPR051742+39-141+
|
— |
PF17777+45-116+Insertion_domain_in_60S_ribosomal_protein_L10P
|
— |
PTHR45841+39-141+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
146-146
|
1.000
|
1-145
|
9qiw_CF
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.765
|
16365.890
|
9.121
|
5.000
|
28.082
|
9.589
|
45.205
|
54.795
|
16.438
|
11.644
|
43.836
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
268.752
|
656.140
|
578.785
|
353.703
|
267.575
|
261.972
|
180.335
|
404.422
|
8.293
|
155.972
|
92.681
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.411
|
-1.029
|
-0.601
|
-0.434
|
— |
-0.530
|
0.522
|
-1.024
|
— |
5.623
|
5.866
|
— | — |
No JSON data available for plots.