SCN Proteipedia

Hg_chrom1_TN10mRNA_356

Organism: Heterodera glycines Gene Locus: chr1:4703193-4706941 Feature type: polypeptide

Protein Sequence

Length: 1,031

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.105	0.947	1.199	0.435	1.455	2.388	0.323	1.164	1.013	1.009	0.941	1.369	0.781	0.933	1.722	0.928	0.763	0.705	0.821	0.571	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_341	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	29-J3_J4_Female_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KKDEIEVEMKKKRTVR,RRSLTINRTCPKCRRP,KKKRTVRTSQTATRRRQL,RRILSEKKDEIEVEMKKKR	—	—	—	—	—	—	0.000	—	—	0.451	0.234	0.016	0.694	0.067	0.169	0.206	0.050	0.207	0.070

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002913	2.000	1.000	Hsc_gene_9649.t1	Hsc_gene_9650.t1	—	—	XP_024025857.1 E3 ubiquitin ligase BIG BROTHER [Morus notabilis];XP_024025863.1 E3 ubiquitin ligase BIG BROTHER [Morus notabilis];XP_024025865.1 E3 ubiquitin ligase BIG BROTHER [Morus notabilis]	GAV67021	0.060

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.965\|GO:0009987_0.863\|GO:0005575_0.827\|GO:0110165_0.820\|GO:0008152_0.809\|GO:0043170_0.809\|GO:0003674_0.796\|GO:0005622_0.784\|GO:0016020_0.752\|GO:0065007_0.752\|GO:0050789_0.743\|GO:0050794_0.731\|GO:0043226_0.730\|GO:0044238_0.716\|GO:0043229_0.712\|GO:0019538_0.669\|GO:0043227_0.656\|GO:0005488_0.653\|GO:0043231_0.627\|GO:0003824_0.623\|GO:0140096_0.615\|GO:0016740_0.606\|GO:0016746_0.592\|GO:0016755_0.592\|GO:0019787_0.592\|GO:0004842_0.591\|GO:0005737_0.575\|GO:0019222_0.567\|GO:0043412_0.556\|GO:0036211_0.552\|GO:0060255_0.551\|GO:0005515_0.541\|GO:0043687_0.537\|GO:0070647_0.536\|GO:0016567_0.535\|GO:0032446_0.535\|GO:0005634_0.531\|GO:0048518_0.503	IPR001841+848-894_849-894+\|IPR013083+833-902+	—	PF13639+848-894+Ring_finger_domain	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	138-213;428-548;632-840;981-1031	4.000	1-137;214-427;549-631;841-980	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.494	118606.020	6.862	5.000	32.299	8.147	56.838	43.162	16.974	15.325	44.811

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	turquoise	188.382	11.225	46.445	55.922	210.964	429.231	257.754	244.768	65.675	303.800	201.746

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.818	2.179	0.378	1.883	1.037	-0.724	-0.914	—	—	—	—	—	—

No JSON data available for plots.

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