SCN Proteipedia

Hg_chrom1_TN10mRNA_357

Organism: Heterodera glycines Gene Locus: chr1:4706911-4715172 Feature type: polypeptide

Protein Sequence

Length: 2,325

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.81	1.16	1.134	0.905	0.939	1.334	0.722	1.398	1.07	1.238	1.03	1.417	1.004	1.084	1.369	0.694	1.079	0.769	0.86	0.797	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_342	—	—	1.111	1.000	1.000	1.000	2.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	1-J4_Female	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKRP,RYDKRNR	—	—	—	—	—	—	0.000	—	—	0.731	0.202	0.037	0.414	0.115	0.051	0.056	0.007	0.114	0.070

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000359	3.000	5.000	Hsc_gene_22970.t1;Hsc_gene_25817.t1;Hsc_gene_2889.t1;Hsc_gene_9493.t1;Hsc_gene_9650.t1	Hsc_gene_9493.t1;Hsc_gene_9495.t1;Hsc_gene_9496.t1;Hsc_gene_9651.t1	—	—	KYN07868.1 ATP-dependent DNA helicase PIF1, partial [Cyphomyrmex costatus]	No	-0.020

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000723\|GO:0003678\|GO:0006281	GO:0003674_0.900\|GO:0008150_0.821\|GO:0009987_0.774\|GO:0005488_0.715\|GO:0005575_0.710\|GO:0110165_0.709\|GO:0003824_0.643\|GO:0005622_0.635\|GO:0071840_0.635\|GO:0016020_0.634\|GO:0016043_0.630\|GO:0043226_0.593\|GO:0016787_0.572\|GO:0043229_0.571\|GO:0006996_0.567\|GO:0008152_0.545\|GO:0043227_0.541\|GO:0044238_0.533\|GO:0051276_0.530\|GO:0032392_0.525\|GO:0032508_0.525\|GO:0071103_0.525\|GO:0140640_0.522\|GO:0016462_0.521\|GO:0016817_0.521\|GO:0016818_0.521\|GO:0017111_0.521\|GO:0009058_0.517\|GO:0016887_0.516\|GO:0140657_0.516\|GO:0140097_0.515\|GO:0044237_0.513\|GO:0043231_0.512\|GO:0003678_0.509\|GO:0004386_0.509\|GO:0008094_0.509\|GO:0043139_0.509\|GO:0043170_0.508	IPR002589+1941-2138_1953-2096_1975-2096+\|IPR003323+2248-2325+\|IPR010285+1423-1616+\|IPR025476+680-858+\|IPR027417+1385-1591_1412-1580_1537-1860+\|IPR043472+1914-2133_1952-2133+\|IPR049163+1723-1761+	SM00506+1953-2096+	PF01661+1975-2096+Macro_domain\|PF05970+1423-1616+PIF1-like_helicase\|PF14214+680-858+Helitron_helicase-like_domain_at_N-terminus\|PF21530+1723-1761+DNA_helicase_Pif1,_2B_domain	—	PTHR23274+1393-1853+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-5;215-279;1863-2012;2133-2248	4.000	6-214;280-1862;2013-2132;2249-2325	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.770	263078.240	8.615	70.500	28.172	10.237	49.806	50.194	16.301	11.871	49.032

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	orange	turquoise	147.034	11.633	28.854	21.708	44.792	191.269	93.368	76.801	47.298	432.142	267.209

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.083	0.763	—	1.017	2.105	-1.026	-1.421	0.422	—	—	—	—	—

No JSON data available for plots.

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