Hg_chrom1_TN10mRNA_358
Organism: Heterodera glycines Gene Locus: chr1:4716908-4719389 Feature type: polypeptideProtein Sequence
Length: 215
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.919 | 1.082 | 0.507 | 1.604 | 0.698 | 1.193 | 0.664 | 1.395 | 0.517 | 0.88 | 1.057 | 1.915 | 1.809 | 1.342 | 1.898 | 0.997 | 0.686 | 1.057 | 1.431 | 0.274 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_343
|
— | — |
1.778
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
3.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
KRDRVVSLTKVKKKSRQ
|
— | — |
102-122
|
1.000
|
— | — |
0.000
|
— | — |
0.447
|
0.106
|
0.028
|
0.342
|
0.113
|
0.177
|
0.063
|
0.009
|
0.102
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002914
|
2.000
|
1.000
|
Hsc_gene_17792.t1
|
— | — |
A4FV84.1 mRNA turnover protein 4 homolog [Bos taurus]
|
KAK5978381.1 Ribosome assembly factor mrt4, partial [Trichostrongylus colubriformis]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.677|GO:0110165_0.677|GO:0008150_0.671|GO:0009987_0.608|GO:0005622_0.604|GO:0016020_0.587|GO:0043226_0.572|GO:0043229_0.544|GO:0043227_0.527|GO:0043231_0.517
|
IPR043141+30-108+|IPR051742+1-108+
|
— | — | — |
PTHR45841+1-108+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-17
|
1.000
|
18-215
|
9qiw_CF
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.536
|
24446.400
|
10.750
|
23.000
|
26.047
|
12.093
|
46.512
|
53.488
|
19.070
|
6.977
|
50.698
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
82.631
|
155.732
|
87.987
|
94.289
|
90.564
|
83.571
|
70.268
|
107.499
|
2.056
|
101.254
|
58.740
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.052
|
-0.861
|
— | — | — | — | — |
-0.472
|
— |
5.618
|
— | — | — |
No JSON data available for plots.