Hg_chrom1_TN10mRNA_362
Organism: Heterodera glycines Gene Locus: chr1:4901141-4903316 Feature type: polypeptideProtein Sequence
Length: 314
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.852 | 1.259 | 0.232 | 0.549 | 0.531 | 0.98 | 0.379 | 1.592 | 3.043 | 1.765 | 0.82 | 1.686 | 2.3 | 0.429 | 0.715 | 1.046 | 0.783 | 0.869 | 0.49 | 1.03 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_347
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
PLLKRRF
|
— | — | — | — | — | — |
0.000
|
— | — |
0.168
|
0.086
|
0.029
|
0.099
|
0.305
|
0.138
|
0.209
|
0.036
|
0.707
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000723
|
5.000
|
1.000
|
Hsc_gene_2775.t1
|
Hsc_gene_2775.t1
|
— | — |
KAI1709102.1 sre G protein-coupled chemoreceptor domain-containing protein [Ditylenchus destructor]
|
No
|
-0.460
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007606|GO:0016020
|
— |
IPR004151+90-297+|IPR052860+12-285+
|
— |
PF03125+90-297+Sre_G_protein-coupled_chemoreceptor
|
— |
PTHR47521+12-285+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-314
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.658
|
35899.970
|
10.080
|
19.000
|
16.561
|
15.605
|
37.898
|
62.102
|
12.102
|
4.459
|
38.854
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
3.275
|
0.000
|
2.760
|
2.209
|
0.311
|
0.000
|
0.101
|
0.419
|
0.000
|
12.151
|
6.944
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.807
|
5.574
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.